Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   EL097_RS01220 Genome accession   NZ_LR134293
Coordinates   241280..241768 (-) Length   162 a.a.
NCBI ID   WP_039994770.1    Uniprot ID   -
Organism   Streptococcus canis strain NCTC12191     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 236280..246768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL097_RS01190 (NCTC12191_00233) - 236505..237350 (+) 846 WP_003046591.1 mechanosensitive ion channel family protein -
  EL097_RS01195 (NCTC12191_00234) - 237420..237983 (-) 564 WP_003046588.1 TIGR01440 family protein -
  EL097_RS01200 (NCTC12191_00235) - 237996..238466 (-) 471 WP_003046585.1 ECF transporter S component -
  EL097_RS01205 (NCTC12191_00236) - 238453..239220 (-) 768 WP_003046582.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  EL097_RS01210 (NCTC12191_00237) truA 239210..239959 (-) 750 WP_003046579.1 tRNA pseudouridine(38-40) synthase TruA -
  EL097_RS01220 (NCTC12191_00238) comX/sigX/comX2/sigX2 241280..241768 (-) 489 WP_039994770.1 hypothetical protein Regulator

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 19678.57 Da        Isoelectric Point: 5.7359

>NTDB_id=1120484 EL097_RS01220 WP_039994770.1 241280..241768(-) (comX/sigX/comX2/sigX2) [Streptococcus canis strain NCTC12191]
MDMSIETEVVFEKVKPIILKLKRHYYIQLWEREDWLQEGYLILVSLLEQHPELLWEDERLYRYFKTKFSSYLKDVLRQQE
SQKRQFHKMAYEEIGDVAHAIPSGGLWLDDYVAYREVVEVLEGQLGEEERLQFQALVRGERFKGRQALLRKLRPYFEGFE
RS

Nucleotide


Download         Length: 489 bp        

>NTDB_id=1120484 EL097_RS01220 WP_039994770.1 241280..241768(-) (comX/sigX/comX2/sigX2) [Streptococcus canis strain NCTC12191]
ATGGACATGTCGATAGAGACAGAAGTAGTGTTTGAGAAGGTGAAACCCATTATCTTGAAGTTGAAGCGTCATTATTATAT
TCAATTGTGGGAGAGAGAGGATTGGTTACAGGAAGGGTATTTGATATTGGTGAGTCTTCTAGAGCAGCATCCTGAATTAC
TTTGGGAAGACGAACGGTTGTATCGTTATTTTAAGACTAAGTTTTCCTCGTATTTGAAGGATGTCTTGCGTCAGCAAGAA
AGTCAGAAGCGTCAGTTTCATAAAATGGCTTATGAGGAGATAGGTGATGTAGCACATGCGATTCCATCAGGTGGGTTATG
GTTGGATGATTACGTGGCCTATAGGGAGGTGGTTGAGGTGTTAGAAGGGCAGTTGGGTGAAGAGGAGCGGTTACAGTTTC
AGGCCTTGGTGAGAGGGGAACGGTTTAAGGGAAGGCAGGCCTTGCTTAGGAAGTTGCGTCCTTATTTTGAGGGATTTGAG
AGAAGTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

77.987

98.148

0.765
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

77.987

98.148

0.765
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

77.358

98.148

0.759
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

77.358

98.148

0.759
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

76.73

98.148

0.753
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

76.73

98.148

0.753
  comX/sigX Streptococcus mutans UA159

51.899

97.531

0.506
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

48.077

96.296

0.463
  comX Streptococcus sobrinus strain NIDR 6715-7

42.857

99.383

0.426
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

41.667

96.296

0.401
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

41.667

96.296

0.401
  comX Streptococcus thermophilus LMD-9

43.046

93.21

0.401
  comX Streptococcus thermophilus LMG 18311

43.046

93.21

0.401
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

41.722

93.21

0.389
  comX/sigX Streptococcus salivarius strain HSISS4

41.06

93.21

0.383
  comX Streptococcus salivarius SK126

41.06

93.21

0.383
  comX/comX2 Streptococcus pneumoniae TIGR4

41.333

92.593

0.383
  comX/comX1 Streptococcus pneumoniae TIGR4

41.333

92.593

0.383
  comX/comX2 Streptococcus pneumoniae Rx1

41.333

92.593

0.383
  comX/comX1 Streptococcus pneumoniae Rx1

41.333

92.593

0.383
  comX/comX2 Streptococcus pneumoniae D39

41.333

92.593

0.383
  comX/comX1 Streptococcus pneumoniae D39

41.333

92.593

0.383
  comX/comX2 Streptococcus pneumoniae R6

41.333

92.593

0.383
  comX/comX1 Streptococcus pneumoniae R6

41.333

92.593

0.383
  comX/sigX Streptococcus suis D9

39.355

95.679

0.377
  comX/sigX Streptococcus suis isolate S10

39.355

95.679

0.377
  comX/sigX Streptococcus suis P1/7

39.355

95.679

0.377
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

40.397

93.21

0.377
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

40.397

93.21

0.377

Multiple sequence alignment