Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | GJA_RS21075 | Genome accession | NZ_HG322949 |
| Coordinates | 4904905..4905948 (+) | Length | 347 a.a. |
| NCBI ID | WP_038496195.1 | Uniprot ID | W0VB96 |
| Organism | Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4899905..4910948
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJA_RS21055 (GJA_4540) | - | 4899941..4901500 (-) | 1560 | WP_081905518.1 | FAD/NAD(P)-binding protein | - |
| GJA_RS21060 (GJA_4541) | - | 4901595..4903112 (+) | 1518 | WP_038496189.1 | PLP-dependent aminotransferase family protein | - |
| GJA_RS21065 (GJA_4542) | proC | 4903189..4904037 (-) | 849 | WP_038496191.1 | pyrroline-5-carboxylate reductase | - |
| GJA_RS21070 (GJA_4543) | - | 4904087..4904788 (-) | 702 | WP_038496193.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| GJA_RS21075 (GJA_4544) | pilT | 4904905..4905948 (+) | 1044 | WP_038496195.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| GJA_RS21080 (GJA_4545) | pilU | 4905991..4907127 (+) | 1137 | WP_038496197.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| GJA_RS21085 (GJA_4546) | - | 4907127..4907618 (+) | 492 | WP_038496199.1 | glutathione peroxidase | - |
| GJA_RS21090 (GJA_4548) | - | 4907828..4909909 (+) | 2082 | WP_038496202.1 | GGDEF domain-containing protein | - |
Sequence
Protein
Download Length: 347 a.a. Molecular weight: 37949.58 Da Isoelectric Point: 6.5769
>NTDB_id=1111907 GJA_RS21075 WP_038496195.1 4904905..4905948(+) (pilT) [Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628]
MDISELLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINLPAMDHKEVHGMIYDIMNDGQRKAYEEVLEVDFSFEIPGLAR
FRVNAFNQERGASAVLRTIPSKIMSLEDLNCPRIFADLALKPRGLVLVTGPTGSGKSTTLAAMVNHVNENEYGHILTIED
PIEFVHDSKKCLINQREVGPHTLSFNNALRSALREDPDVILVGELRDLETIRLALSAAETGHLVFGTLHTSSAAKTIDRI
VDVFPADEKEMVRAMLSESLQAVISQTLLKTKDGSGRVAAHEIMVATPAIRNLIREAKIAQMYSAIQTGSNVGMQTLDQT
LTDLVRRNVISAAAARAAAKTPDNFPG
MDISELLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINLPAMDHKEVHGMIYDIMNDGQRKAYEEVLEVDFSFEIPGLAR
FRVNAFNQERGASAVLRTIPSKIMSLEDLNCPRIFADLALKPRGLVLVTGPTGSGKSTTLAAMVNHVNENEYGHILTIED
PIEFVHDSKKCLINQREVGPHTLSFNNALRSALREDPDVILVGELRDLETIRLALSAAETGHLVFGTLHTSSAAKTIDRI
VDVFPADEKEMVRAMLSESLQAVISQTLLKTKDGSGRVAAHEIMVATPAIRNLIREAKIAQMYSAIQTGSNVGMQTLDQT
LTDLVRRNVISAAAARAAAKTPDNFPG
Nucleotide
Download Length: 1044 bp
>NTDB_id=1111907 GJA_RS21075 WP_038496195.1 4904905..4905948(+) (pilT) [Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628]
ATGGACATCTCCGAACTACTCGCATTCTCCGTCAAGAATAAAGCTTCCGACTTGCATCTGTCCGCCGGCCTGCCGCCGAT
GATACGGGTGCATGGCGACGTGCGTCGCATCAATTTGCCGGCGATGGACCACAAGGAAGTCCACGGCATGATTTATGACA
TCATGAACGATGGCCAGCGCAAGGCGTATGAAGAAGTACTGGAAGTCGACTTTTCGTTCGAAATTCCCGGCCTGGCGCGC
TTCCGCGTCAATGCCTTCAACCAGGAGCGCGGCGCCTCGGCCGTGCTGCGCACGATTCCGTCGAAGATCATGAGCCTGGA
AGACTTGAATTGCCCGCGCATCTTCGCCGACCTGGCGCTGAAACCGCGCGGCCTGGTGCTGGTGACCGGCCCTACCGGTT
CCGGCAAGTCGACCACGCTGGCGGCGATGGTGAACCACGTCAATGAAAACGAATACGGCCACATCCTGACCATCGAAGAC
CCGATCGAGTTTGTGCACGACTCCAAAAAATGCCTGATCAACCAGCGCGAAGTCGGTCCGCACACTTTGTCGTTCAACAA
TGCGCTGCGCTCCGCCTTGCGCGAAGACCCGGACGTGATCCTGGTCGGCGAATTGCGCGACCTGGAAACCATCCGCCTGG
CGCTGTCGGCCGCCGAAACCGGCCACCTGGTGTTCGGCACGCTGCATACCTCGTCCGCCGCCAAGACCATCGACCGTATC
GTCGACGTGTTTCCGGCCGATGAAAAGGAAATGGTGCGCGCGATGTTGTCTGAATCGCTGCAAGCGGTGATTTCGCAAAC
CCTGCTGAAAACCAAGGATGGCAGCGGCCGCGTCGCCGCGCATGAAATCATGGTCGCCACGCCGGCCATCCGCAACCTGA
TCCGCGAAGCCAAGATCGCCCAGATGTATTCGGCGATCCAGACCGGCAGCAATGTCGGCATGCAGACGCTGGACCAGACC
CTGACCGACCTGGTGCGCCGCAACGTGATTTCGGCCGCCGCCGCGCGTGCCGCCGCCAAGACGCCCGATAACTTTCCCGG
CTGA
ATGGACATCTCCGAACTACTCGCATTCTCCGTCAAGAATAAAGCTTCCGACTTGCATCTGTCCGCCGGCCTGCCGCCGAT
GATACGGGTGCATGGCGACGTGCGTCGCATCAATTTGCCGGCGATGGACCACAAGGAAGTCCACGGCATGATTTATGACA
TCATGAACGATGGCCAGCGCAAGGCGTATGAAGAAGTACTGGAAGTCGACTTTTCGTTCGAAATTCCCGGCCTGGCGCGC
TTCCGCGTCAATGCCTTCAACCAGGAGCGCGGCGCCTCGGCCGTGCTGCGCACGATTCCGTCGAAGATCATGAGCCTGGA
AGACTTGAATTGCCCGCGCATCTTCGCCGACCTGGCGCTGAAACCGCGCGGCCTGGTGCTGGTGACCGGCCCTACCGGTT
CCGGCAAGTCGACCACGCTGGCGGCGATGGTGAACCACGTCAATGAAAACGAATACGGCCACATCCTGACCATCGAAGAC
CCGATCGAGTTTGTGCACGACTCCAAAAAATGCCTGATCAACCAGCGCGAAGTCGGTCCGCACACTTTGTCGTTCAACAA
TGCGCTGCGCTCCGCCTTGCGCGAAGACCCGGACGTGATCCTGGTCGGCGAATTGCGCGACCTGGAAACCATCCGCCTGG
CGCTGTCGGCCGCCGAAACCGGCCACCTGGTGTTCGGCACGCTGCATACCTCGTCCGCCGCCAAGACCATCGACCGTATC
GTCGACGTGTTTCCGGCCGATGAAAAGGAAATGGTGCGCGCGATGTTGTCTGAATCGCTGCAAGCGGTGATTTCGCAAAC
CCTGCTGAAAACCAAGGATGGCAGCGGCCGCGTCGCCGCGCATGAAATCATGGTCGCCACGCCGGCCATCCGCAACCTGA
TCCGCGAAGCCAAGATCGCCCAGATGTATTCGGCGATCCAGACCGGCAGCAATGTCGGCATGCAGACGCTGGACCAGACC
CTGACCGACCTGGTGCGCCGCAACGTGATTTCGGCCGCCGCCGCGCGTGCCGCCGCCAAGACGCCCGATAACTTTCCCGG
CTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Acinetobacter nosocomialis M2 |
76.522 |
99.424 |
0.761 |
| pilT | Acinetobacter baumannii D1279779 |
76.522 |
99.424 |
0.761 |
| pilT | Acinetobacter baumannii strain A118 |
76.522 |
99.424 |
0.761 |
| pilT | Pseudomonas stutzeri DSM 10701 |
75.072 |
99.424 |
0.746 |
| pilT | Acinetobacter baylyi ADP1 |
74.783 |
99.424 |
0.744 |
| pilT | Pseudomonas aeruginosa PAK |
74.493 |
99.424 |
0.741 |
| pilT | Legionella pneumophila strain Lp02 |
74.041 |
97.695 |
0.723 |
| pilT | Legionella pneumophila strain ERS1305867 |
74.041 |
97.695 |
0.723 |
| pilT | Neisseria gonorrhoeae MS11 |
69.855 |
99.424 |
0.695 |
| pilT | Neisseria meningitidis 8013 |
69.855 |
99.424 |
0.695 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
70.783 |
95.677 |
0.677 |
| pilT | Vibrio cholerae strain A1552 |
70.783 |
95.677 |
0.677 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
50.725 |
99.424 |
0.504 |
| pilU | Acinetobacter baylyi ADP1 |
42.486 |
99.712 |
0.424 |
| pilU | Pseudomonas stutzeri DSM 10701 |
42.12 |
100 |
0.424 |
| pilU | Vibrio cholerae strain A1552 |
39.71 |
99.424 |
0.395 |