Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ACM0P2_RS15015 Genome accession   NZ_CP183209
Coordinates   3393841..3394884 (-) Length   347 a.a.
NCBI ID   WP_159117866.1    Uniprot ID   -
Organism   Alteromonas sp. OM2203     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3388841..3399884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM0P2_RS14985 (ACM0P2_14985) - 3389295..3390023 (+) 729 WP_173359132.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  ACM0P2_RS14990 (ACM0P2_14990) gshB 3390139..3391089 (+) 951 WP_173359133.1 glutathione synthase -
  ACM0P2_RS14995 (ACM0P2_14995) - 3391202..3391768 (+) 567 WP_173359134.1 YqgE/AlgH family protein -
  ACM0P2_RS15000 (ACM0P2_15000) ruvX 3391761..3392192 (+) 432 WP_159117869.1 Holliday junction resolvase RuvX -
  ACM0P2_RS15005 (ACM0P2_15005) - 3392268..3392594 (-) 327 WP_159117868.1 DUF2007 domain-containing protein -
  ACM0P2_RS15010 (ACM0P2_15010) pilU 3392720..3393832 (-) 1113 WP_120961799.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ACM0P2_RS15015 (ACM0P2_15015) pilT 3393841..3394884 (-) 1044 WP_159117866.1 type IV pilus twitching motility protein PilT Machinery gene
  ACM0P2_RS15020 (ACM0P2_15020) - 3394912..3395598 (+) 687 WP_159117865.1 YggS family pyridoxal phosphate-dependent enzyme -
  ACM0P2_RS15025 (ACM0P2_15025) proC 3395649..3396470 (+) 822 WP_173359135.1 pyrroline-5-carboxylate reductase -
  ACM0P2_RS15030 (ACM0P2_15030) - 3396491..3397027 (+) 537 WP_159117863.1 YggT family protein -
  ACM0P2_RS15035 (ACM0P2_15035) - 3397117..3397590 (+) 474 WP_159117862.1 DUF4426 domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 38509.31 Da        Isoelectric Point: 6.5666

>NTDB_id=1104503 ACM0P2_RS15015 WP_159117866.1 3393841..3394884(-) (pilT) [Alteromonas sp. OM2203]
MDITELLAFSVKNNASDLHLSAGLPPIIRVDGEMRKLNVPALDHKQVHSLIYEIMNDMQRKEYEENLETDFSFEVNGLSR
FRVNAFVQNRGAAAVLRTIPSKVLTLEDLGAPEIFKEIINQPTGIVLVTGATGSGKSTTLAAMVDHINTHKREHILTIED
PIEFVHENKLCLVNQREVHRDTHSFNNALRSALREDPDVILVGELRDLETIRLAISAAETGHLVFGTLHTNSAPKTIDRI
IDVFPAEEKAMVRSMLSESLRAVISQTLLKKVGGGRIAAHEIMVGIPAIRNLIREDKVPQMYSVIQTGQAHGMQTMDQCL
QRLVAMGVITKQDAAAKSVDKQSMNNF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1104503 ACM0P2_RS15015 WP_159117866.1 3393841..3394884(-) (pilT) [Alteromonas sp. OM2203]
GTGGATATTACCGAACTTTTGGCTTTCAGTGTTAAGAATAACGCCTCAGATTTACACTTATCAGCGGGCCTACCACCAAT
TATTCGTGTAGATGGCGAAATGCGTAAACTGAACGTGCCTGCTCTCGATCACAAGCAAGTACACAGTCTCATTTATGAGA
TTATGAATGACATGCAGCGCAAAGAATACGAAGAAAATCTAGAAACAGATTTTTCTTTCGAAGTAAATGGCCTGTCGCGC
TTTCGTGTAAATGCATTCGTTCAAAATCGAGGCGCTGCCGCGGTACTGCGTACCATTCCTAGCAAGGTATTAACGCTTGA
AGATTTAGGCGCGCCTGAAATTTTCAAAGAGATAATAAACCAACCTACGGGGATTGTACTTGTAACAGGGGCAACGGGGT
CAGGTAAAAGTACCACGCTTGCAGCAATGGTCGATCATATCAACACCCACAAGCGTGAGCATATTCTCACTATTGAAGAT
CCAATCGAATTCGTTCACGAAAACAAACTTTGCCTGGTAAACCAGCGAGAGGTGCACCGCGACACCCACTCGTTTAACAA
TGCGTTGCGTTCAGCACTTCGTGAAGACCCTGACGTGATTTTGGTGGGCGAGCTACGTGACCTTGAAACCATACGACTAG
CTATATCAGCTGCGGAAACCGGTCACTTGGTGTTTGGAACGCTTCACACTAACTCTGCGCCAAAGACTATCGACCGTATT
ATCGATGTATTCCCAGCCGAAGAAAAGGCCATGGTGCGCTCCATGCTCTCAGAGTCGCTACGCGCGGTAATATCTCAAAC
CCTGCTGAAGAAAGTTGGAGGGGGTCGAATAGCAGCACACGAGATCATGGTAGGTATTCCAGCTATTCGTAATCTTATTC
GCGAAGATAAGGTGCCGCAAATGTACTCTGTCATTCAAACTGGTCAGGCACATGGTATGCAAACGATGGATCAGTGCTTA
CAGCGTTTAGTGGCCATGGGGGTGATTACTAAACAAGATGCGGCGGCTAAGTCGGTGGATAAACAGTCGATGAACAACTT
CTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baumannii strain A118

75.872

99.135

0.752
  pilT Acinetobacter baumannii D1279779

75.872

99.135

0.752
  pilT Pseudomonas stutzeri DSM 10701

75.652

99.424

0.752
  pilT Acinetobacter nosocomialis M2

75.581

99.135

0.749
  pilT Acinetobacter baylyi ADP1

74.709

99.135

0.741
  pilT Pseudomonas aeruginosa PAK

75.74

97.406

0.738
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

73.294

97.118

0.712
  pilT Vibrio cholerae strain A1552

73.294

97.118

0.712
  pilT Legionella pneumophila strain Lp02

72.434

98.271

0.712
  pilT Legionella pneumophila strain ERS1305867

72.434

98.271

0.712
  pilT Neisseria meningitidis 8013

64.451

99.712

0.643
  pilT Neisseria gonorrhoeae MS11

64.162

99.712

0.64
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.312

98.847

0.507
  pilU Vibrio cholerae strain A1552

42.687

96.542

0.412
  pilU Acinetobacter baylyi ADP1

42.012

97.406

0.409
  pilU Pseudomonas stutzeri DSM 10701

42.09

96.542

0.406

Multiple sequence alignment