Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ACNSN2_RS12390 Genome accession   NZ_CP183075
Coordinates   2646223..2647263 (-) Length   346 a.a.
NCBI ID   WP_010391590.1    Uniprot ID   A0A317FVK0
Organism   Pseudoalteromonas sp. US3C1013     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2641223..2652263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNSN2_RS12360 (ACNSN2_12360) - 2641425..2641898 (+) 474 WP_010391582.1 hypothetical protein -
  ACNSN2_RS12365 (ACNSN2_12365) rsmE 2641969..2642703 (+) 735 WP_055012525.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  ACNSN2_RS12370 (ACNSN2_12370) gshB 2642770..2643720 (+) 951 WP_418607559.1 glutathione synthase -
  ACNSN2_RS12375 (ACNSN2_12375) - 2643848..2644405 (+) 558 WP_418607561.1 YqgE/AlgH family protein -
  ACNSN2_RS12380 (ACNSN2_12380) ruvX 2644423..2644872 (+) 450 WP_013465849.1 Holliday junction resolvase RuvX -
  ACNSN2_RS12385 (ACNSN2_12385) pilU 2645077..2646213 (-) 1137 WP_054201910.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ACNSN2_RS12390 (ACNSN2_12390) pilT 2646223..2647263 (-) 1041 WP_010391590.1 type IV pilus twitching motility protein PilT Machinery gene
  ACNSN2_RS12395 (ACNSN2_12395) - 2647266..2647979 (+) 714 WP_418607564.1 YggS family pyridoxal phosphate-dependent enzyme -
  ACNSN2_RS12400 (ACNSN2_12400) proC 2647997..2648818 (+) 822 WP_010391593.1 pyrroline-5-carboxylate reductase -
  ACNSN2_RS12405 (ACNSN2_12405) - 2648845..2649378 (+) 534 WP_008113334.1 YggT family protein -
  ACNSN2_RS12410 (ACNSN2_12410) - 2649437..2649880 (+) 444 WP_010391596.1 DUF4426 domain-containing protein -
  ACNSN2_RS12415 (ACNSN2_12415) - 2649883..2650482 (+) 600 WP_418607567.1 XTP/dITP diphosphatase -
  ACNSN2_RS12420 (ACNSN2_12420) hemW 2650479..2651615 (+) 1137 WP_138596744.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 38284.52 Da        Isoelectric Point: 6.2312

>NTDB_id=1103984 ACNSN2_RS12390 WP_010391590.1 2646223..2647263(-) (pilT) [Pseudoalteromonas sp. US3C1013]
MDITELLAFSVQHKASDLHLSSGVSPMIRVDGDVRRINIPALGDKEVSSLVYDIMNDNQRKDYEQNLEVDFSFEVPNLAR
FRVNAFNSNRGPAAVFRTIPSDVLTLEDLGAPEIFKQISDNPRGLVLVTGPTGSGKSTTLAAMVDYINQNKHHHVLTIED
PIEFVHDNKLSLINQREVHRDTHSFSNALRSALREDPDVILVGELRDLETIRLAMTAAETGHLVFGTLHTTSAPKTIDRI
IDVFPGEEKDMIRSMLSESLRAVISQTLIKKVGGGRVAAHEIMLATPAIRNLIREDKIAQMYSSIQTGASQGMQTMDQCL
TNLVNRGIITHSAAYTKAQDKTQFSA

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=1103984 ACNSN2_RS12390 WP_010391590.1 2646223..2647263(-) (pilT) [Pseudoalteromonas sp. US3C1013]
ATGGATATCACCGAATTATTGGCATTTAGTGTGCAACATAAAGCATCAGATTTGCACTTATCATCAGGGGTGTCACCTAT
GATACGTGTTGATGGCGATGTGCGACGAATTAATATACCAGCACTTGGAGATAAAGAAGTCAGCAGTCTGGTTTATGACA
TTATGAACGATAACCAGCGTAAGGACTATGAACAAAATCTCGAAGTGGATTTTTCTTTTGAAGTCCCTAATTTAGCACGT
TTTCGTGTAAATGCCTTTAACTCTAATCGTGGTCCTGCTGCCGTGTTTCGTACTATCCCGAGTGATGTATTGACACTTGA
AGATTTGGGCGCGCCGGAAATATTCAAACAAATTTCAGATAACCCACGAGGCTTAGTATTAGTTACCGGCCCTACAGGCT
CAGGTAAGTCGACTACACTCGCAGCCATGGTGGACTATATAAATCAAAATAAACATCATCATGTACTGACCATTGAAGAT
CCTATCGAATTTGTGCACGATAATAAACTCAGCTTAATTAACCAGCGTGAAGTTCACCGCGATACACATAGTTTTTCTAA
TGCCTTGCGAAGTGCATTGCGTGAAGACCCTGATGTTATTTTGGTTGGTGAGTTACGAGATCTAGAAACTATTCGCCTTG
CTATGACTGCTGCTGAAACTGGTCACTTAGTGTTTGGCACTTTGCATACCACGTCGGCACCTAAAACCATTGACCGTATT
ATTGATGTATTCCCTGGTGAAGAAAAAGACATGATCCGCTCTATGCTTTCTGAATCATTGCGTGCGGTTATCTCACAAAC
ACTGATCAAGAAGGTCGGTGGAGGGCGAGTGGCTGCACACGAAATTATGTTGGCAACGCCTGCTATTCGTAACTTAATTC
GTGAAGATAAAATTGCTCAAATGTACTCATCGATTCAAACCGGTGCGTCGCAGGGCATGCAAACCATGGATCAATGTTTA
ACGAATCTAGTTAACCGAGGCATTATCACTCACTCAGCGGCGTATACAAAAGCACAAGATAAGACGCAGTTTAGCGCTTA
A

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A317FVK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas stutzeri DSM 10701

76.163

99.422

0.757
  pilT Acinetobacter nosocomialis M2

76.163

99.422

0.757
  pilT Acinetobacter baumannii D1279779

76.163

99.422

0.757
  pilT Acinetobacter baumannii strain A118

76.163

99.422

0.757
  pilT Pseudomonas aeruginosa PAK

75.581

99.422

0.751
  pilT Acinetobacter baylyi ADP1

75.291

99.422

0.749
  pilT Legionella pneumophila strain ERS1305867

71.802

99.422

0.714
  pilT Legionella pneumophila strain Lp02

71.802

99.422

0.714
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

73.252

95.087

0.697
  pilT Vibrio cholerae strain A1552

73.252

95.087

0.697
  pilT Neisseria gonorrhoeae MS11

69.364

100

0.694
  pilT Neisseria meningitidis 8013

69.364

100

0.694
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.023

100

0.52
  pilU Vibrio cholerae strain A1552

42.154

93.931

0.396
  pilU Pseudomonas stutzeri DSM 10701

39.233

97.977

0.384
  pilU Acinetobacter baylyi ADP1

38.824

98.266

0.382

Multiple sequence alignment