Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ACGHZ6_RS23725 Genome accession   NZ_AP031498
Coordinates   5465239..5466273 (-) Length   344 a.a.
NCBI ID   WP_390616549.1    Uniprot ID   -
Organism   Maricurvus nonylphenolicus strain KU41E     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5460239..5471273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHZ6_RS23700 (R50073_47330) - 5460814..5461758 (+) 945 WP_390616544.1 energy transducer TonB -
  ACGHZ6_RS23705 (R50073_47340) - 5461797..5462387 (+) 591 WP_390616545.1 YqgE/AlgH family protein -
  ACGHZ6_RS23710 (R50073_47350) ruvX 5462406..5462819 (+) 414 WP_390616546.1 Holliday junction resolvase RuvX -
  ACGHZ6_RS23715 (R50073_47360) - 5462773..5463912 (-) 1140 WP_390616547.1 PQQ-dependent sugar dehydrogenase -
  ACGHZ6_RS23720 (R50073_47370) pilU 5464081..5465223 (-) 1143 WP_390616548.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ACGHZ6_RS23725 (R50073_47380) pilT 5465239..5466273 (-) 1035 WP_390616549.1 type IV pilus twitching motility protein PilT Machinery gene
  ACGHZ6_RS23730 (R50073_47390) - 5466398..5467099 (+) 702 WP_390616550.1 YggS family pyridoxal phosphate-dependent enzyme -
  ACGHZ6_RS23735 (R50073_47400) proC 5467130..5467948 (+) 819 WP_390616552.1 pyrroline-5-carboxylate reductase -
  ACGHZ6_RS23740 (R50073_47410) - 5467990..5468598 (+) 609 WP_390616553.1 YggT family protein -
  ACGHZ6_RS23745 (R50073_47420) - 5468845..5470836 (+) 1992 WP_390616554.1 dynamin family protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38368.06 Da        Isoelectric Point: 6.5066

>NTDB_id=109939 ACGHZ6_RS23725 WP_390616549.1 5465239..5466273(-) (pilT) [Maricurvus nonylphenolicus strain KU41E]
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPAMEHKQVHSLIYEIMNDKQRKDFEEFLETDFSFEVPGVAR
FRVNAFNHNRGAGAVFRTIPSKVLTMEELGMGQVFRDISQTPRGIVLVTGPTGSGKSTTLAAMMDYINDNKYEHILTIED
PIEFVHESKKCLVNQREVHRDTHGFAEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPAEEKAMVRSMLSESLQAVISQTLIKKVGGGRVAAHEIMRGTPAIRNLIREDKVAQMYSAIQTGASVGMQTMDQCL
ADLVERRLITREHAREKAKMPENF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=109939 ACGHZ6_RS23725 WP_390616549.1 5465239..5466273(-) (pilT) [Maricurvus nonylphenolicus strain KU41E]
ATGGATATTACGGAACTCTTGGCCTTTAGTGCGAAACAGGGGGCCTCGGATTTGCACTTGTCCGCCGGATTACCACCGAT
GATTCGTGTTGACGGTGATGTGCGGCGAATTAATTTGCCGGCCATGGAGCACAAGCAGGTTCATAGTCTGATTTATGAGA
TTATGAATGACAAGCAACGTAAGGATTTTGAAGAGTTTCTGGAAACGGATTTCTCATTTGAAGTTCCCGGTGTGGCACGT
TTCCGTGTAAACGCCTTTAACCACAATCGCGGTGCCGGTGCCGTATTCCGGACCATTCCTTCCAAGGTGTTAACCATGGA
AGAGCTGGGCATGGGTCAGGTGTTTCGTGACATCTCGCAGACCCCGCGTGGTATTGTGCTGGTCACCGGGCCGACCGGTT
CCGGTAAGTCCACCACCCTGGCGGCGATGATGGACTATATCAACGACAACAAATACGAACATATTCTGACCATTGAGGAC
CCTATCGAATTCGTCCACGAATCGAAAAAGTGTCTGGTCAACCAGCGGGAAGTTCACCGCGATACCCACGGCTTTGCCGA
AGCACTGCGCTCGGCGCTGCGGGAAGACCCGGATATTATCCTCGTAGGTGAGATGCGGGACTTGGAAACCATTCGCCTGG
CATTAACTGCGGCAGAAACCGGTCACTTGGTATTCGGTACCCTGCACACCACCTCAGCGGCCAAAACTATCGACCGGGTG
GTGGATGTATTCCCCGCTGAAGAAAAAGCCATGGTGCGTTCCATGCTGTCGGAATCCCTGCAGGCGGTAATTTCCCAAAC
CCTGATCAAAAAAGTTGGCGGTGGTCGTGTGGCGGCACACGAAATTATGCGCGGTACCCCGGCGATTCGTAACCTGATTC
GTGAAGATAAGGTTGCGCAGATGTACTCGGCGATTCAAACCGGTGCTTCTGTTGGTATGCAGACCATGGATCAGTGTTTG
GCTGATTTGGTTGAGCGACGTTTGATCACTCGCGAACACGCGCGTGAGAAGGCCAAAATGCCAGAGAATTTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas aeruginosa PAK

90.116

100

0.901
  pilT Pseudomonas stutzeri DSM 10701

88.953

100

0.89
  pilT Acinetobacter nosocomialis M2

84.012

100

0.84
  pilT Acinetobacter baumannii D1279779

84.012

100

0.84
  pilT Acinetobacter baumannii strain A118

84.012

100

0.84
  pilT Acinetobacter baylyi ADP1

80.523

100

0.805
  pilT Legionella pneumophila strain Lp02

72.781

98.256

0.715
  pilT Legionella pneumophila strain ERS1305867

72.781

98.256

0.715
  pilT Neisseria meningitidis 8013

67.536

100

0.677
  pilT Neisseria gonorrhoeae MS11

67.246

100

0.674
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

67.941

98.837

0.672
  pilT Vibrio cholerae strain A1552

67.941

98.837

0.672
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.333

100

0.535
  pilU Pseudomonas stutzeri DSM 10701

40.597

97.384

0.395
  pilU Vibrio cholerae strain A1552

41.231

94.477

0.39
  pilU Acinetobacter baylyi ADP1

38.439

100

0.387

Multiple sequence alignment