Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ACMG4O_RS02750 Genome accession   NZ_CP179934
Coordinates   568171..569205 (+) Length   344 a.a.
NCBI ID   WP_142947895.1    Uniprot ID   -
Organism   Alloalcanivorax venustensis strain A6     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 563171..574205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMG4O_RS02725 (ACMG4O_02725) - 564040..564915 (-) 876 WP_414434395.1 thioesterase family protein -
  ACMG4O_RS02730 (ACMG4O_02730) - 565086..565889 (+) 804 WP_414434396.1 SDR family oxidoreductase -
  ACMG4O_RS02735 (ACMG4O_02735) - 565923..566471 (-) 549 WP_142947893.1 YggT family protein -
  ACMG4O_RS02740 (ACMG4O_02740) proC 566568..567377 (-) 810 WP_067608471.1 pyrroline-5-carboxylate reductase -
  ACMG4O_RS02745 (ACMG4O_02745) - 567394..568089 (-) 696 WP_142947894.1 YggS family pyridoxal phosphate-dependent enzyme -
  ACMG4O_RS02750 (ACMG4O_02750) pilT 568171..569205 (+) 1035 WP_142947895.1 type IV pilus twitching motility protein PilT Machinery gene
  ACMG4O_RS02755 (ACMG4O_02755) pilU 569219..570343 (+) 1125 WP_370183907.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ACMG4O_RS02760 (ACMG4O_02760) - 570447..570869 (+) 423 WP_414434397.1 OsmC family protein -
  ACMG4O_RS02765 (ACMG4O_02765) - 570890..571744 (-) 855 WP_414434398.1 pirin family protein -
  ACMG4O_RS02770 (ACMG4O_02770) - 571779..572783 (-) 1005 WP_414434399.1 glutathione S-transferase family protein -
  ACMG4O_RS02775 (ACMG4O_02775) - 572887..573768 (+) 882 WP_414434400.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37864.55 Da        Isoelectric Point: 6.4200

>NTDB_id=1093997 ACMG4O_RS02750 WP_142947895.1 568171..569205(+) (pilT) [Alloalcanivorax venustensis strain A6]
MDITELLAFSAKNGASDLHLSAGLPPMIRVDGDVRRINLPAMEHKEVHALVYDIMNDKQRKDYEEFLETDFSFDVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGMGKVFQKISDFPRGIVLVTGPTGSGKSTTLAAMMDYINESRYEHILTIED
PIEFVHESKKCLVNQREVHRDTLGFAEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPAEEKSMVRSMLSESLQAVISQTLMKKNGGGRIAAHEIMIGTAAIRNLIREDKVAQMYSAIQTGGALGMQTLDQCL
QGLVKKGLVARQAAQEKAKNPDAI

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1093997 ACMG4O_RS02750 WP_142947895.1 568171..569205(+) (pilT) [Alloalcanivorax venustensis strain A6]
ATGGATATCACCGAACTGCTTGCCTTCAGCGCCAAAAACGGCGCCTCGGATTTGCACCTTTCCGCCGGCCTGCCCCCGAT
GATCCGGGTGGACGGCGACGTGCGCCGTATCAATCTGCCGGCCATGGAGCACAAGGAAGTGCACGCGCTCGTTTATGACA
TCATGAACGACAAGCAGCGCAAGGATTACGAGGAATTCCTGGAGACCGACTTCTCCTTCGACGTGCCCGGCGTGGCCCGT
TTCCGGGTCAACGCCTTCAACCAGAACCGCGGCGCCGGCGCGGTGTTCCGGACCATTCCCTCCAAGGTGCTGACCATGGA
GGACCTGGGCATGGGCAAGGTGTTCCAGAAGATATCCGATTTCCCACGCGGCATCGTGCTGGTGACCGGGCCCACCGGCT
CGGGTAAATCCACCACCCTGGCGGCGATGATGGACTACATCAACGAGAGCCGCTACGAGCACATCCTCACCATCGAGGAC
CCGATCGAATTCGTGCACGAATCCAAGAAGTGCCTGGTCAACCAGCGGGAAGTGCACCGCGACACCCTGGGCTTCGCCGA
GGCGCTGCGCTCCGCCCTGCGGGAAGACCCGGACATTATTCTGGTGGGTGAATTGCGCGATCTGGAAACCATCCGGCTGG
CGCTCACCGCCGCCGAGACCGGCCACCTGGTGTTCGGCACCCTGCACACCACCTCGGCGGCCAAGACCATCGACCGGGTG
GTGGACGTGTTCCCGGCGGAAGAGAAATCCATGGTCCGCTCGATGTTGTCGGAATCCCTGCAGGCGGTGATCTCGCAGAC
GCTGATGAAGAAAAACGGCGGCGGGCGGATTGCCGCCCACGAGATCATGATCGGCACCGCCGCGATCCGGAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTACTCCGCCATCCAGACCGGCGGCGCCCTGGGCATGCAGACCCTGGACCAGTGCCTG
CAGGGCCTGGTGAAGAAAGGCCTGGTGGCCCGTCAGGCGGCCCAGGAAAAAGCCAAGAACCCGGACGCCATCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas stutzeri DSM 10701

89.181

99.419

0.887
  pilT Pseudomonas aeruginosa PAK

88.596

99.419

0.881
  pilT Acinetobacter nosocomialis M2

84.302

100

0.843
  pilT Acinetobacter baumannii D1279779

84.302

100

0.843
  pilT Acinetobacter baumannii strain A118

84.302

100

0.843
  pilT Acinetobacter baylyi ADP1

80.758

99.709

0.805
  pilT Legionella pneumophila strain Lp02

75.882

98.837

0.75
  pilT Legionella pneumophila strain ERS1305867

75.882

98.837

0.75
  pilT Neisseria gonorrhoeae MS11

68.696

100

0.689
  pilT Neisseria meningitidis 8013

68.696

100

0.689
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

68.249

97.965

0.669
  pilT Vibrio cholerae strain A1552

68.249

97.965

0.669
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.292

99.419

0.5
  pilU Vibrio cholerae strain A1552

40.233

99.709

0.401
  pilU Pseudomonas stutzeri DSM 10701

40.597

97.384

0.395
  pilU Acinetobacter baylyi ADP1

37.861

100

0.381

Multiple sequence alignment