Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | ACMG4O_RS02755 | Genome accession | NZ_CP179934 |
| Coordinates | 569219..570343 (+) | Length | 374 a.a. |
| NCBI ID | WP_370183907.1 | Uniprot ID | - |
| Organism | Alloalcanivorax venustensis strain A6 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 564219..575343
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMG4O_RS02730 (ACMG4O_02730) | - | 565086..565889 (+) | 804 | WP_414434396.1 | SDR family oxidoreductase | - |
| ACMG4O_RS02735 (ACMG4O_02735) | - | 565923..566471 (-) | 549 | WP_142947893.1 | YggT family protein | - |
| ACMG4O_RS02740 (ACMG4O_02740) | proC | 566568..567377 (-) | 810 | WP_067608471.1 | pyrroline-5-carboxylate reductase | - |
| ACMG4O_RS02745 (ACMG4O_02745) | - | 567394..568089 (-) | 696 | WP_142947894.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| ACMG4O_RS02750 (ACMG4O_02750) | pilT | 568171..569205 (+) | 1035 | WP_142947895.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| ACMG4O_RS02755 (ACMG4O_02755) | pilU | 569219..570343 (+) | 1125 | WP_370183907.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ACMG4O_RS02760 (ACMG4O_02760) | - | 570447..570869 (+) | 423 | WP_414434397.1 | OsmC family protein | - |
| ACMG4O_RS02765 (ACMG4O_02765) | - | 570890..571744 (-) | 855 | WP_414434398.1 | pirin family protein | - |
| ACMG4O_RS02770 (ACMG4O_02770) | - | 571779..572783 (-) | 1005 | WP_414434399.1 | glutathione S-transferase family protein | - |
| ACMG4O_RS02775 (ACMG4O_02775) | - | 572887..573768 (+) | 882 | WP_414434400.1 | LysR family transcriptional regulator | - |
| ACMG4O_RS02780 (ACMG4O_02780) | - | 573789..574508 (+) | 720 | WP_414434401.1 | hypothetical protein | - |
| ACMG4O_RS02785 (ACMG4O_02785) | - | 574567..575109 (+) | 543 | WP_142947902.1 | DUF4136 domain-containing protein | - |
Sequence
Protein
Download Length: 374 a.a. Molecular weight: 41626.81 Da Isoelectric Point: 6.8572
>NTDB_id=1093998 ACMG4O_RS02755 WP_370183907.1 569219..570343(+) (pilU) [Alloalcanivorax venustensis strain A6]
MEFEDLLKLMVQKGGSDLFITAGVPPSMKIHGKVLPVTRNALTPDMTRDIVLSTMNEKQRKEFLEHHECNFAISARGIGR
FRASAFYQRNLVGMVLRRIETKIPNVDELRLPPVIKDLAMTKRGLVIFVGATGTGKSTSLASMIGHRNKNSKGHIISIED
PIEFIHQHQGCIVTQREVGIDTESFEVALKNTLRQAPDVILIGEVRSREVMDHAIAFAETGHLCLATLHANNANQALDRI
IHFFPADRHNQLYMDLSLNLRGIVAQQLIPTPDGKGRRAAIEVLLNTPLVSDHIRKGEIHLLKALMGKSREQGMQTFDQA
LYDLYDAGEITYEDAIAHADSPNDLRLMIKLGNETDATSLDHATRGLTIEGDHD
MEFEDLLKLMVQKGGSDLFITAGVPPSMKIHGKVLPVTRNALTPDMTRDIVLSTMNEKQRKEFLEHHECNFAISARGIGR
FRASAFYQRNLVGMVLRRIETKIPNVDELRLPPVIKDLAMTKRGLVIFVGATGTGKSTSLASMIGHRNKNSKGHIISIED
PIEFIHQHQGCIVTQREVGIDTESFEVALKNTLRQAPDVILIGEVRSREVMDHAIAFAETGHLCLATLHANNANQALDRI
IHFFPADRHNQLYMDLSLNLRGIVAQQLIPTPDGKGRRAAIEVLLNTPLVSDHIRKGEIHLLKALMGKSREQGMQTFDQA
LYDLYDAGEITYEDAIAHADSPNDLRLMIKLGNETDATSLDHATRGLTIEGDHD
Nucleotide
Download Length: 1125 bp
>NTDB_id=1093998 ACMG4O_RS02755 WP_370183907.1 569219..570343(+) (pilU) [Alloalcanivorax venustensis strain A6]
ATGGAATTTGAAGATCTTCTTAAATTAATGGTGCAGAAAGGCGGCTCGGACCTGTTCATCACCGCCGGCGTGCCGCCGAG
CATGAAAATTCACGGCAAGGTGCTGCCGGTGACGCGCAACGCCCTGACCCCGGACATGACCCGGGACATCGTGCTCAGCA
CCATGAACGAAAAGCAGCGCAAGGAATTCCTCGAACACCACGAGTGCAACTTCGCGATTTCCGCCCGCGGCATCGGCCGG
TTCCGGGCCAGCGCCTTTTACCAGCGCAACCTGGTGGGCATGGTGCTGCGCCGCATCGAGACCAAGATTCCCAACGTGGA
CGAGCTGCGCCTGCCGCCGGTGATCAAGGACCTGGCGATGACCAAGCGCGGCCTGGTGATTTTCGTCGGCGCCACCGGCA
CCGGTAAATCCACCTCGCTGGCGTCGATGATCGGCCACCGCAACAAGAACTCCAAAGGGCACATCATCTCCATCGAGGAC
CCGATCGAATTCATCCACCAACACCAGGGCTGCATCGTCACGCAACGGGAAGTGGGCATCGACACGGAATCCTTCGAGGT
GGCGCTGAAGAACACCCTGCGTCAGGCGCCGGACGTGATTTTGATCGGCGAGGTGCGCAGCCGCGAGGTAATGGACCACG
CCATCGCGTTCGCCGAGACCGGCCACCTCTGCCTGGCCACCCTGCACGCCAACAATGCCAACCAGGCGCTGGACCGCATC
ATTCACTTCTTCCCGGCGGATCGCCATAACCAGCTTTACATGGACCTGTCGCTGAACCTGCGCGGCATCGTCGCCCAGCA
GCTGATCCCGACGCCGGACGGCAAGGGCCGGCGCGCCGCCATCGAAGTGCTGCTCAACACGCCGCTGGTGTCGGACCACA
TCCGCAAGGGCGAGATTCATCTGCTCAAGGCGCTGATGGGCAAGTCCCGGGAACAGGGCATGCAGACCTTCGACCAGGCG
CTCTACGATCTCTACGACGCCGGCGAGATCACCTACGAAGACGCCATCGCCCACGCCGACTCGCCCAACGACCTGCGCCT
GATGATCAAGCTCGGCAACGAAACCGACGCCACCAGCCTGGATCACGCCACGCGCGGCCTGACCATCGAAGGCGACCACG
ACTAG
ATGGAATTTGAAGATCTTCTTAAATTAATGGTGCAGAAAGGCGGCTCGGACCTGTTCATCACCGCCGGCGTGCCGCCGAG
CATGAAAATTCACGGCAAGGTGCTGCCGGTGACGCGCAACGCCCTGACCCCGGACATGACCCGGGACATCGTGCTCAGCA
CCATGAACGAAAAGCAGCGCAAGGAATTCCTCGAACACCACGAGTGCAACTTCGCGATTTCCGCCCGCGGCATCGGCCGG
TTCCGGGCCAGCGCCTTTTACCAGCGCAACCTGGTGGGCATGGTGCTGCGCCGCATCGAGACCAAGATTCCCAACGTGGA
CGAGCTGCGCCTGCCGCCGGTGATCAAGGACCTGGCGATGACCAAGCGCGGCCTGGTGATTTTCGTCGGCGCCACCGGCA
CCGGTAAATCCACCTCGCTGGCGTCGATGATCGGCCACCGCAACAAGAACTCCAAAGGGCACATCATCTCCATCGAGGAC
CCGATCGAATTCATCCACCAACACCAGGGCTGCATCGTCACGCAACGGGAAGTGGGCATCGACACGGAATCCTTCGAGGT
GGCGCTGAAGAACACCCTGCGTCAGGCGCCGGACGTGATTTTGATCGGCGAGGTGCGCAGCCGCGAGGTAATGGACCACG
CCATCGCGTTCGCCGAGACCGGCCACCTCTGCCTGGCCACCCTGCACGCCAACAATGCCAACCAGGCGCTGGACCGCATC
ATTCACTTCTTCCCGGCGGATCGCCATAACCAGCTTTACATGGACCTGTCGCTGAACCTGCGCGGCATCGTCGCCCAGCA
GCTGATCCCGACGCCGGACGGCAAGGGCCGGCGCGCCGCCATCGAAGTGCTGCTCAACACGCCGCTGGTGTCGGACCACA
TCCGCAAGGGCGAGATTCATCTGCTCAAGGCGCTGATGGGCAAGTCCCGGGAACAGGGCATGCAGACCTTCGACCAGGCG
CTCTACGATCTCTACGACGCCGGCGAGATCACCTACGAAGACGCCATCGCCCACGCCGACTCGCCCAACGACCTGCGCCT
GATGATCAAGCTCGGCAACGAAACCGACGCCACCAGCCTGGATCACGCCACGCGCGGCCTGACCATCGAAGGCGACCACG
ACTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
78.075 |
100 |
0.781 |
| pilU | Acinetobacter baylyi ADP1 |
68.908 |
95.455 |
0.658 |
| pilU | Vibrio cholerae strain A1552 |
56 |
93.583 |
0.524 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.017 |
95.455 |
0.401 |