Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | RE428_RS03385 | Genome accession | NZ_AP028878 |
| Coordinates | 767281..768315 (+) | Length | 344 a.a. |
| NCBI ID | WP_004578942.1 | Uniprot ID | N6VWL6 |
| Organism | Marinobacter nanhaiticus D15-8W | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 762281..773315
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RE428_RS03370 (RE428_06830) | - | 764794..765378 (-) | 585 | WP_004578945.1 | YggT family protein | - |
| RE428_RS03375 (RE428_06840) | proC | 765453..766286 (-) | 834 | WP_004578944.1 | pyrroline-5-carboxylate reductase | - |
| RE428_RS03380 (RE428_06850) | - | 766381..767079 (-) | 699 | WP_004578943.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| RE428_RS03385 (RE428_06860) | pilT | 767281..768315 (+) | 1035 | WP_004578942.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| RE428_RS03390 (RE428_06870) | pilU | 768387..769508 (+) | 1122 | WP_004578941.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| RE428_RS03395 (RE428_06880) | - | 769834..771246 (+) | 1413 | WP_004578940.1 | outer membrane protein transport protein | - |
| RE428_RS03400 (RE428_06890) | - | 771357..771728 (-) | 372 | WP_004578939.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 344 a.a. Molecular weight: 38143.86 Da Isoelectric Point: 6.4200
>NTDB_id=107247 RE428_RS03385 WP_004578942.1 767281..768315(+) (pilT) [Marinobacter nanhaiticus D15-8W]
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPPMEHKEVHSLIYDIMNDKQRKDYEEFLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGMGQVFKDVSSVPRGLVLVTGPTGSGKSTTLAAMLDYINDSRYEHILTIED
PIEFVHESKKCLVNQREVHRDTLGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRI
VDVFPAEEKSMVRSMLSESLQAVISQTLMKKVGGGRVAAHEIMIGTSAIRNLIREDKVAQMYSAIQTGGSIGMQTLDQCL
QRMLQKGLITREAARTKAKMPDNF
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPPMEHKEVHSLIYDIMNDKQRKDYEEFLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGMGQVFKDVSSVPRGLVLVTGPTGSGKSTTLAAMLDYINDSRYEHILTIED
PIEFVHESKKCLVNQREVHRDTLGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRI
VDVFPAEEKSMVRSMLSESLQAVISQTLMKKVGGGRVAAHEIMIGTSAIRNLIREDKVAQMYSAIQTGGSIGMQTLDQCL
QRMLQKGLITREAARTKAKMPDNF
Nucleotide
Download Length: 1035 bp
>NTDB_id=107247 RE428_RS03385 WP_004578942.1 767281..768315(+) (pilT) [Marinobacter nanhaiticus D15-8W]
ATGGATATAACTGAACTCCTGGCCTTCTCGGCGAAACAGGGCGCGTCGGACTTGCACCTGTCTGCCGGACTGCCACCGAT
GATCCGTGTCGACGGCGATGTGCGGCGGATCAACCTGCCTCCCATGGAGCACAAAGAAGTCCATTCGCTCATTTATGACA
TCATGAATGACAAGCAGCGGAAGGACTACGAAGAATTCCTCGAGACCGACTTCTCCTTCGAAGTGCCTGGCGTGGCCCGC
TTCCGTGTCAACGCATTCAACCAGAATCGGGGCGCCGGCGCGGTGTTCCGGACTATCCCCTCCAAGGTACTGACCATGGA
AGATCTGGGCATGGGCCAGGTCTTCAAGGATGTCTCTTCTGTTCCGCGTGGCCTGGTGCTCGTTACGGGACCGACCGGTT
CCGGTAAGTCGACCACGCTGGCGGCGATGCTCGACTACATCAACGACAGTCGTTACGAGCATATCCTCACCATCGAGGAC
CCGATCGAATTCGTGCACGAATCCAAGAAGTGCCTGGTGAACCAGCGGGAAGTCCATCGCGATACCCTGGGCTTCAACGA
GGCCTTGCGCTCGGCCCTGCGGGAAGACCCCGACATTATCCTGGTCGGTGAGCTTCGGGACCTGGAAACCATTCGCCTGG
CGCTGACCGCTGCCGAAACCGGTCACCTGGTTTTCGGCACCCTGCATACCACCTCCGCCGCCAAGACCATCGACCGTATC
GTTGACGTGTTCCCGGCGGAAGAAAAATCCATGGTCCGCTCGATGCTCTCCGAATCCCTGCAGGCGGTTATCTCCCAGAC
CCTGATGAAGAAGGTCGGCGGCGGCCGGGTGGCGGCTCACGAGATCATGATCGGCACTTCGGCAATCCGGAACCTGATCC
GGGAAGATAAGGTCGCGCAGATGTATTCGGCGATCCAGACTGGTGGTTCAATCGGCATGCAGACCCTCGACCAATGCCTG
CAGCGCATGCTGCAAAAAGGTCTGATTACCCGCGAAGCGGCACGGACCAAGGCCAAGATGCCGGACAACTTCTAA
ATGGATATAACTGAACTCCTGGCCTTCTCGGCGAAACAGGGCGCGTCGGACTTGCACCTGTCTGCCGGACTGCCACCGAT
GATCCGTGTCGACGGCGATGTGCGGCGGATCAACCTGCCTCCCATGGAGCACAAAGAAGTCCATTCGCTCATTTATGACA
TCATGAATGACAAGCAGCGGAAGGACTACGAAGAATTCCTCGAGACCGACTTCTCCTTCGAAGTGCCTGGCGTGGCCCGC
TTCCGTGTCAACGCATTCAACCAGAATCGGGGCGCCGGCGCGGTGTTCCGGACTATCCCCTCCAAGGTACTGACCATGGA
AGATCTGGGCATGGGCCAGGTCTTCAAGGATGTCTCTTCTGTTCCGCGTGGCCTGGTGCTCGTTACGGGACCGACCGGTT
CCGGTAAGTCGACCACGCTGGCGGCGATGCTCGACTACATCAACGACAGTCGTTACGAGCATATCCTCACCATCGAGGAC
CCGATCGAATTCGTGCACGAATCCAAGAAGTGCCTGGTGAACCAGCGGGAAGTCCATCGCGATACCCTGGGCTTCAACGA
GGCCTTGCGCTCGGCCCTGCGGGAAGACCCCGACATTATCCTGGTCGGTGAGCTTCGGGACCTGGAAACCATTCGCCTGG
CGCTGACCGCTGCCGAAACCGGTCACCTGGTTTTCGGCACCCTGCATACCACCTCCGCCGCCAAGACCATCGACCGTATC
GTTGACGTGTTCCCGGCGGAAGAAAAATCCATGGTCCGCTCGATGCTCTCCGAATCCCTGCAGGCGGTTATCTCCCAGAC
CCTGATGAAGAAGGTCGGCGGCGGCCGGGTGGCGGCTCACGAGATCATGATCGGCACTTCGGCAATCCGGAACCTGATCC
GGGAAGATAAGGTCGCGCAGATGTATTCGGCGATCCAGACTGGTGGTTCAATCGGCATGCAGACCCTCGACCAATGCCTG
CAGCGCATGCTGCAAAAAGGTCTGATTACCCGCGAAGCGGCACGGACCAAGGCCAAGATGCCGGACAACTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
90.407 |
100 |
0.904 |
| pilT | Pseudomonas stutzeri DSM 10701 |
89.535 |
100 |
0.895 |
| pilT | Acinetobacter nosocomialis M2 |
83.721 |
100 |
0.837 |
| pilT | Acinetobacter baumannii D1279779 |
83.721 |
100 |
0.837 |
| pilT | Acinetobacter baumannii strain A118 |
83.721 |
100 |
0.837 |
| pilT | Acinetobacter baylyi ADP1 |
82.267 |
100 |
0.823 |
| pilT | Legionella pneumophila strain Lp02 |
76.923 |
98.256 |
0.756 |
| pilT | Legionella pneumophila strain ERS1305867 |
76.923 |
98.256 |
0.756 |
| pilT | Neisseria gonorrhoeae MS11 |
67.941 |
98.837 |
0.672 |
| pilT | Neisseria meningitidis 8013 |
67.941 |
98.837 |
0.672 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
67.059 |
98.837 |
0.663 |
| pilT | Vibrio cholerae strain A1552 |
67.059 |
98.837 |
0.663 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
51.304 |
100 |
0.515 |
| pilU | Pseudomonas stutzeri DSM 10701 |
41.493 |
97.384 |
0.404 |
| pilU | Acinetobacter baylyi ADP1 |
38.439 |
100 |
0.387 |
| pilU | Vibrio cholerae strain A1552 |
39.701 |
97.384 |
0.387 |