Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | RE428_RS03390 | Genome accession | NZ_AP028878 |
| Coordinates | 768387..769508 (+) | Length | 373 a.a. |
| NCBI ID | WP_004578941.1 | Uniprot ID | N6W3G0 |
| Organism | Marinobacter nanhaiticus D15-8W | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 763387..774508
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RE428_RS03370 (RE428_06830) | - | 764794..765378 (-) | 585 | WP_004578945.1 | YggT family protein | - |
| RE428_RS03375 (RE428_06840) | proC | 765453..766286 (-) | 834 | WP_004578944.1 | pyrroline-5-carboxylate reductase | - |
| RE428_RS03380 (RE428_06850) | - | 766381..767079 (-) | 699 | WP_004578943.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| RE428_RS03385 (RE428_06860) | pilT | 767281..768315 (+) | 1035 | WP_004578942.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| RE428_RS03390 (RE428_06870) | pilU | 768387..769508 (+) | 1122 | WP_004578941.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| RE428_RS03395 (RE428_06880) | - | 769834..771246 (+) | 1413 | WP_004578940.1 | outer membrane protein transport protein | - |
| RE428_RS03400 (RE428_06890) | - | 771357..771728 (-) | 372 | WP_004578939.1 | hypothetical protein | - |
| RE428_RS03405 (RE428_06900) | - | 772440..774200 (+) | 1761 | WP_169334047.1 | TonB-dependent receptor | - |
Sequence
Protein
Download Length: 373 a.a. Molecular weight: 41442.65 Da Isoelectric Point: 6.6614
>NTDB_id=107248 RE428_RS03390 WP_004578941.1 768387..769508(+) (pilU) [Marinobacter nanhaiticus D15-8W]
MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGKVLPVTKNALTPEQTREFVYGAMNDKQRAEFDETHECNFAISARGIGR
FRVSAFFQRNICGMVLRRIEVKIPQLDDLSLPDIIKDLAMTKRGLIIFVGATGTGKSTSLAAMIGHRNRNSRGHIISIED
PIEFVHQHQGCIVTQREVGIDTESFEVALKNTLRQAPDVILIGEVRTKQTMEYAVQFAETGHLCLATLHANNANQALDRI
IQFFNPEQHNQIWMDLSLNLKAVVAQQLVPTPDGKGRRAVIEVLINTPLAQDLIRKGEVHKLKELMSKSTEMGMQTFDQA
LYRLYAEGAITYEDALAHADSANDLRLMIKLGADAAGSDKLSSTVDKLSIQDD
MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGKVLPVTKNALTPEQTREFVYGAMNDKQRAEFDETHECNFAISARGIGR
FRVSAFFQRNICGMVLRRIEVKIPQLDDLSLPDIIKDLAMTKRGLIIFVGATGTGKSTSLAAMIGHRNRNSRGHIISIED
PIEFVHQHQGCIVTQREVGIDTESFEVALKNTLRQAPDVILIGEVRTKQTMEYAVQFAETGHLCLATLHANNANQALDRI
IQFFNPEQHNQIWMDLSLNLKAVVAQQLVPTPDGKGRRAVIEVLINTPLAQDLIRKGEVHKLKELMSKSTEMGMQTFDQA
LYRLYAEGAITYEDALAHADSANDLRLMIKLGADAAGSDKLSSTVDKLSIQDD
Nucleotide
Download Length: 1122 bp
>NTDB_id=107248 RE428_RS03390 WP_004578941.1 768387..769508(+) (pilU) [Marinobacter nanhaiticus D15-8W]
ATGGAATTTGAAAAACTGCTGCGGTTGATGGTGGAGAAAGGCGGTTCTGACCTCTTCATTACGGCCGGTGTGCCACCCAG
CATGAAGGTCAACGGCAAGGTGCTCCCCGTCACGAAGAACGCGCTGACGCCGGAACAGACCCGCGAATTCGTCTACGGCG
CGATGAATGACAAGCAGCGCGCCGAGTTCGACGAAACCCACGAGTGCAACTTTGCGATCAGTGCCCGGGGCATCGGCCGT
TTCCGGGTTAGCGCCTTCTTCCAGCGCAATATCTGCGGCATGGTGCTGCGTCGGATCGAGGTCAAGATCCCGCAGTTGGA
TGACCTGTCCCTGCCGGATATCATCAAGGACTTGGCGATGACCAAGCGGGGGCTGATCATCTTCGTGGGCGCCACCGGCA
CCGGTAAGTCCACCTCGCTGGCGGCGATGATCGGTCACCGTAACCGCAATTCCCGCGGCCATATTATTTCTATCGAGGAT
CCGATCGAGTTCGTCCATCAGCATCAGGGCTGCATCGTCACCCAGCGTGAGGTGGGTATCGACACGGAAAGCTTTGAGGT
GGCCCTGAAAAACACGCTACGGCAGGCGCCCGATGTGATACTGATCGGGGAGGTGCGGACCAAGCAGACCATGGAATACG
CGGTGCAATTCGCCGAAACCGGTCACCTGTGTCTGGCCACCCTGCACGCCAACAACGCGAACCAGGCGCTGGATCGGATT
ATCCAGTTCTTCAATCCGGAACAGCATAACCAGATCTGGATGGACCTTTCCCTTAACCTTAAAGCCGTCGTGGCCCAGCA
ATTGGTGCCGACGCCGGATGGCAAAGGACGCCGCGCGGTCATCGAGGTATTGATCAATACCCCTCTGGCCCAGGACCTGA
TCCGCAAGGGTGAAGTTCACAAACTGAAGGAACTAATGTCCAAATCCACCGAAATGGGCATGCAGACCTTTGACCAGGCG
CTTTACCGACTCTACGCTGAAGGTGCGATCACCTACGAAGACGCGTTGGCCCATGCGGATTCGGCCAACGACCTGCGTCT
GATGATCAAGCTGGGTGCCGATGCGGCCGGTTCTGATAAGCTTTCATCCACGGTCGACAAGCTGTCGATCCAGGACGATT
AG
ATGGAATTTGAAAAACTGCTGCGGTTGATGGTGGAGAAAGGCGGTTCTGACCTCTTCATTACGGCCGGTGTGCCACCCAG
CATGAAGGTCAACGGCAAGGTGCTCCCCGTCACGAAGAACGCGCTGACGCCGGAACAGACCCGCGAATTCGTCTACGGCG
CGATGAATGACAAGCAGCGCGCCGAGTTCGACGAAACCCACGAGTGCAACTTTGCGATCAGTGCCCGGGGCATCGGCCGT
TTCCGGGTTAGCGCCTTCTTCCAGCGCAATATCTGCGGCATGGTGCTGCGTCGGATCGAGGTCAAGATCCCGCAGTTGGA
TGACCTGTCCCTGCCGGATATCATCAAGGACTTGGCGATGACCAAGCGGGGGCTGATCATCTTCGTGGGCGCCACCGGCA
CCGGTAAGTCCACCTCGCTGGCGGCGATGATCGGTCACCGTAACCGCAATTCCCGCGGCCATATTATTTCTATCGAGGAT
CCGATCGAGTTCGTCCATCAGCATCAGGGCTGCATCGTCACCCAGCGTGAGGTGGGTATCGACACGGAAAGCTTTGAGGT
GGCCCTGAAAAACACGCTACGGCAGGCGCCCGATGTGATACTGATCGGGGAGGTGCGGACCAAGCAGACCATGGAATACG
CGGTGCAATTCGCCGAAACCGGTCACCTGTGTCTGGCCACCCTGCACGCCAACAACGCGAACCAGGCGCTGGATCGGATT
ATCCAGTTCTTCAATCCGGAACAGCATAACCAGATCTGGATGGACCTTTCCCTTAACCTTAAAGCCGTCGTGGCCCAGCA
ATTGGTGCCGACGCCGGATGGCAAAGGACGCCGCGCGGTCATCGAGGTATTGATCAATACCCCTCTGGCCCAGGACCTGA
TCCGCAAGGGTGAAGTTCACAAACTGAAGGAACTAATGTCCAAATCCACCGAAATGGGCATGCAGACCTTTGACCAGGCG
CTTTACCGACTCTACGCTGAAGGTGCGATCACCTACGAAGACGCGTTGGCCCATGCGGATTCGGCCAACGACCTGCGTCT
GATGATCAAGCTGGGTGCCGATGCGGCCGGTTCTGATAAGCTTTCATCCACGGTCGACAAGCTGTCGATCCAGGACGATT
AG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
79.245 |
99.464 |
0.788 |
| pilU | Acinetobacter baylyi ADP1 |
66.011 |
95.442 |
0.63 |
| pilU | Vibrio cholerae strain A1552 |
56.868 |
97.587 |
0.555 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.478 |
90.885 |
0.386 |
| pilT | Acinetobacter baumannii strain A118 |
40.896 |
89.812 |
0.367 |
| pilT | Acinetobacter baumannii D1279779 |
40.896 |
89.812 |
0.367 |
| pilT | Acinetobacter nosocomialis M2 |
40.597 |
89.812 |
0.365 |
| pilT | Legionella pneumophila strain Lp02 |
40.597 |
89.812 |
0.365 |
| pilT | Legionella pneumophila strain ERS1305867 |
40.597 |
89.812 |
0.365 |
| pilT | Acinetobacter baylyi ADP1 |
39.589 |
91.421 |
0.362 |