Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ACG2XO_RS00780 Genome accession   NZ_CP172558
Coordinates   174014..175057 (-) Length   347 a.a.
NCBI ID   WP_410498945.1    Uniprot ID   -
Organism   Chitinibacter sp. S2-10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 169014..180057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG2XO_RS00760 (ACG2XO_00760) - 169381..170178 (+) 798 WP_410498941.1 Cof-type HAD-IIB family hydrolase -
  ACG2XO_RS00765 (ACG2XO_00765) - 170197..170730 (+) 534 WP_410498942.1 glutathione peroxidase -
  ACG2XO_RS00770 (ACG2XO_00770) - 170740..172854 (-) 2115 WP_410498943.1 FimV family protein -
  ACG2XO_RS00775 (ACG2XO_00775) pilU 172860..173996 (-) 1137 WP_410498944.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ACG2XO_RS00780 (ACG2XO_00780) pilT 174014..175057 (-) 1044 WP_410498945.1 type IV pilus twitching motility protein PilT Machinery gene
  ACG2XO_RS00785 (ACG2XO_00785) - 175134..175850 (+) 717 WP_410498946.1 YggS family pyridoxal phosphate-dependent enzyme -
  ACG2XO_RS00790 (ACG2XO_00790) proC 175850..176668 (+) 819 WP_410498947.1 pyrroline-5-carboxylate reductase -
  ACG2XO_RS00795 (ACG2XO_00795) - 176680..177264 (+) 585 WP_410498948.1 YggT family protein -
  ACG2XO_RS00800 (ACG2XO_00800) - 177268..177552 (+) 285 WP_410498949.1 DUF167 domain-containing protein -
  ACG2XO_RS00805 (ACG2XO_00805) - 177554..177991 (-) 438 WP_410498950.1 FxsA family protein -
  ACG2XO_RS00810 (ACG2XO_00810) cutA 177990..178328 (+) 339 WP_410498951.1 divalent-cation tolerance protein CutA -
  ACG2XO_RS00815 (ACG2XO_00815) dsbD 178331..179896 (+) 1566 WP_410498952.1 protein-disulfide reductase DsbD -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 38232.01 Da        Isoelectric Point: 6.8842

>NTDB_id=1068020 ACG2XO_RS00780 WP_410498945.1 174014..175057(-) (pilT) [Chitinibacter sp. S2-10]
MEISELLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINLPAMDHKDVHDMVYDIMNDGQRKVYEDTLECDFSFEIPNLAR
FRVNAFVQNRGAGAVFRTIPSKVLTLEELNAPKVFQDIAMNPRGLVLVTGPTGSGKSTTLAAMINFINDNEFGHILTVED
PIEFVHQSKKCLVNQREVGPHTLSFANALRSALREDPDIVLVGEMRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRV
VDVFPAAEKEMVRSMLSESLRAVISQTLLKTKDGTGRVAAHEIMIGIPAIRNLIRENKVAQMYSAIQTGSAHGMQTLDQC
LQNLVQRNIVSIAEARNKAAIPDNFKG

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1068020 ACG2XO_RS00780 WP_410498945.1 174014..175057(-) (pilT) [Chitinibacter sp. S2-10]
ATGGAAATCTCGGAACTCTTAGCGTTTTCGGTCAAAAACAAGGCATCTGACTTGCATTTGTCGGCGGGATTGCCGCCGAT
GATCCGGGTTCATGGCGATGTACGTCGTATTAATTTACCCGCGATGGATCATAAAGACGTACACGATATGGTGTACGACA
TCATGAACGACGGACAGCGTAAGGTGTATGAAGACACGCTGGAGTGTGATTTTTCGTTCGAGATTCCCAATCTGGCACGT
TTCCGGGTCAATGCTTTCGTGCAAAATCGGGGAGCCGGCGCGGTATTTCGGACGATTCCATCCAAAGTGCTCACGCTCGA
AGAGCTTAATGCACCCAAAGTTTTTCAGGATATCGCAATGAATCCGCGTGGTCTGGTGCTGGTGACTGGGCCTACCGGTT
CGGGTAAGTCGACCACTCTGGCCGCGATGATCAATTTCATTAACGATAATGAGTTTGGCCATATTCTGACGGTGGAAGAC
CCGATCGAGTTTGTGCATCAATCCAAAAAATGTCTGGTCAACCAGCGTGAAGTCGGTCCGCATACTTTGTCGTTTGCCAA
TGCCTTGCGCTCGGCTTTGCGGGAAGACCCGGATATTGTGCTGGTGGGGGAGATGCGTGATCTGGAAACGATACGATTGG
CATTGACTGCCGCCGAAACGGGGCATTTGGTGTTCGGGACTTTGCACACCAGTTCGGCCGCTAAAACAATCGACCGGGTG
GTTGACGTTTTTCCGGCTGCGGAAAAAGAAATGGTGCGTTCAATGCTGTCCGAATCATTGCGCGCCGTGATTTCGCAGAC
GCTACTCAAGACCAAAGATGGCACGGGGCGTGTTGCTGCCCATGAAATCATGATCGGTATTCCGGCGATTCGTAACCTGA
TTCGTGAAAATAAAGTCGCACAAATGTATTCGGCCATTCAAACAGGCTCTGCGCACGGTATGCAGACGCTGGATCAGTGT
CTGCAAAATCTGGTGCAGCGCAATATTGTTTCAATTGCCGAGGCGCGCAATAAAGCGGCGATTCCTGATAATTTCAAAGG
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

78.261

99.424

0.778
  pilT Acinetobacter baumannii D1279779

78.261

99.424

0.778
  pilT Acinetobacter baumannii strain A118

78.261

99.424

0.778
  pilT Pseudomonas aeruginosa PAK

76.812

99.424

0.764
  pilT Pseudomonas stutzeri DSM 10701

76.812

99.424

0.764
  pilT Acinetobacter baylyi ADP1

76.522

99.424

0.761
  pilT Neisseria meningitidis 8013

72.566

97.695

0.709
  pilT Neisseria gonorrhoeae MS11

72.271

97.695

0.706
  pilT Legionella pneumophila strain Lp02

73.716

95.389

0.703
  pilT Legionella pneumophila strain ERS1305867

73.716

95.389

0.703
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

68.343

97.406

0.666
  pilT Vibrio cholerae strain A1552

68.343

97.406

0.666
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.435

99.424

0.501
  pilU Vibrio cholerae strain A1552

41.04

99.712

0.409
  pilU Pseudomonas stutzeri DSM 10701

41.791

96.542

0.403
  pilU Acinetobacter baylyi ADP1

38.617

100

0.386

Multiple sequence alignment