Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ACHFJ9_RS20500 Genome accession   NZ_CP171887
Coordinates   2713978..2715018 (-) Length   346 a.a.
NCBI ID   WP_005381015.1    Uniprot ID   A0A2I3C9Z7
Organism   Vibrio sp. D3     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2708978..2720018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFJ9_RS20470 (ACHFJ9_20470) endA 2709130..2709825 (+) 696 WP_005393967.1 deoxyribonuclease I -
  ACHFJ9_RS20475 (ACHFJ9_20475) rsmE 2709942..2710673 (+) 732 WP_005393970.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  ACHFJ9_RS20480 (ACHFJ9_20480) gshB 2710687..2711637 (+) 951 WP_395356141.1 glutathione synthase -
  ACHFJ9_RS20485 (ACHFJ9_20485) - 2711766..2712329 (+) 564 WP_005393973.1 YqgE/AlgH family protein -
  ACHFJ9_RS20490 (ACHFJ9_20490) ruvX 2712364..2712789 (+) 426 WP_005381017.1 Holliday junction resolvase RuvX -
  ACHFJ9_RS20495 (ACHFJ9_20495) pilU 2712851..2713957 (-) 1107 WP_395356144.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ACHFJ9_RS20500 (ACHFJ9_20500) pilT 2713978..2715018 (-) 1041 WP_005381015.1 type IV pilus twitching motility protein PilT Machinery gene
  ACHFJ9_RS20505 (ACHFJ9_20505) - 2715047..2715748 (+) 702 WP_258661906.1 YggS family pyridoxal phosphate-dependent enzyme -
  ACHFJ9_RS20510 (ACHFJ9_20510) proC 2715906..2716724 (+) 819 WP_047008834.1 pyrroline-5-carboxylate reductase -
  ACHFJ9_RS20515 (ACHFJ9_20515) - 2716777..2717334 (+) 558 WP_012841393.1 YggT family protein -
  ACHFJ9_RS20520 (ACHFJ9_20520) yggU 2717334..2717624 (+) 291 WP_005393980.1 DUF167 family protein YggU -
  ACHFJ9_RS20525 (ACHFJ9_20525) - 2717752..2718183 (+) 432 WP_005393982.1 DUF4426 domain-containing protein -
  ACHFJ9_RS20530 (ACHFJ9_20530) - 2718302..2718904 (+) 603 WP_046875112.1 XTP/dITP diphosphatase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 38532.02 Da        Isoelectric Point: 6.5039

>NTDB_id=1064661 ACHFJ9_RS20500 WP_005381015.1 2713978..2715018(-) (pilT) [Vibrio sp. D3]
MDITELLDFSVKHNASDLHLSAGVPPMVRIDGDVRKLGIPAFTHQEVHRLVFEIMNDAQRSEFEEKLEVDFSFELHNVGR
FRVNAFNQSRGCAAVFRTIPSSIPTLEELEAPEIFKKIANAEKGLVLVTGPTGSGKSTTLAAIVDYINRNHNKHVLTIED
PIEFVHNNNKCLINQREVHRDTHSFQNALRSALREDPDVILVGEMRDKETISLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPGSDKDMVRSMLSESLRSVIAQKLLKRNGGGRIACHEIMMATPAIRNLIREDKVAQMYSIIQTGAAHGMQTMEQNA
RQLMAQGMVAREEVDSKIGLEVQQFS

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=1064661 ACHFJ9_RS20500 WP_005381015.1 2713978..2715018(-) (pilT) [Vibrio sp. D3]
ATGGATATCACTGAGTTACTGGATTTTAGTGTAAAACATAATGCCTCAGATCTACATCTTTCTGCAGGTGTCCCACCAAT
GGTTCGTATTGATGGGGATGTGAGAAAACTAGGCATTCCAGCGTTTACACACCAAGAAGTGCATCGTTTGGTTTTCGAAA
TCATGAACGATGCCCAACGCAGTGAGTTCGAAGAAAAACTCGAAGTCGACTTCTCTTTTGAGTTGCATAACGTTGGTCGT
TTCCGTGTCAACGCTTTCAACCAATCTCGTGGCTGTGCGGCAGTATTCCGTACCATTCCAAGTAGCATTCCAACTTTGGA
AGAGCTGGAAGCTCCCGAGATCTTCAAAAAAATTGCGAACGCTGAAAAAGGCTTAGTTCTGGTTACTGGCCCAACAGGTT
CTGGTAAATCGACGACCTTAGCAGCCATTGTTGACTACATTAATCGTAATCACAACAAGCACGTACTCACAATTGAAGAT
CCGATTGAATTTGTTCACAACAACAATAAATGTTTGATCAACCAGCGTGAAGTACACCGTGATACGCATAGTTTCCAAAA
CGCACTGCGCAGCGCATTGCGTGAAGACCCGGATGTCATTCTGGTTGGTGAGATGCGTGACAAAGAAACCATCAGCCTTG
CGTTAACGGCGGCGGAAACGGGGCACTTAGTGTTCGGCACGTTACACACTAGCTCAGCGGCAAAAACCATTGACCGTATT
ATCGATGTGTTCCCTGGCAGTGATAAAGACATGGTGCGCTCGATGCTTTCTGAATCCCTTCGTTCGGTTATCGCGCAAAA
GTTATTGAAACGTAATGGTGGTGGCCGTATTGCATGCCATGAAATCATGATGGCAACGCCTGCGATTCGTAACTTGATCC
GCGAAGACAAAGTCGCGCAGATGTATTCGATCATTCAAACTGGTGCGGCTCACGGCATGCAAACCATGGAGCAAAATGCT
CGTCAGTTAATGGCACAAGGTATGGTCGCTCGTGAAGAGGTCGATAGTAAGATCGGGTTAGAAGTGCAGCAATTCTCGTA
A

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3C9Z7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

86.957

99.711

0.867
  pilT Vibrio cholerae strain A1552

86.957

99.711

0.867
  pilT Acinetobacter baumannii D1279779

72.121

95.376

0.688
  pilT Acinetobacter baumannii strain A118

72.121

95.376

0.688
  pilT Acinetobacter nosocomialis M2

71.818

95.376

0.685
  pilT Acinetobacter baylyi ADP1

71.429

95.087

0.679
  pilT Pseudomonas aeruginosa PAK

69.139

97.399

0.673
  pilT Pseudomonas stutzeri DSM 10701

68.843

97.399

0.671
  pilT Legionella pneumophila strain Lp02

67.674

95.665

0.647
  pilT Legionella pneumophila strain ERS1305867

67.674

95.665

0.647
  pilT Neisseria meningitidis 8013

65.766

96.243

0.633
  pilT Neisseria gonorrhoeae MS11

65.465

96.243

0.63
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.83

91.908

0.486
  pilU Vibrio cholerae strain A1552

41.317

96.532

0.399
  pilU Pseudomonas stutzeri DSM 10701

40.719

96.532

0.393
  pilU Acinetobacter baylyi ADP1

39.062

92.486

0.361

Multiple sequence alignment