Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | PN837_RS13405 | Genome accession | NZ_CP171822 |
| Coordinates | 3194941..3195978 (-) | Length | 345 a.a. |
| NCBI ID | WP_395374070.1 | Uniprot ID | - |
| Organism | Marinicella sp. W31 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3189941..3200978
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PN837_RS13390 (PN837_013390) | - | 3191304..3193073 (+) | 1770 | WP_395374067.1 | GspE/PulE family protein | - |
| PN837_RS13395 (PN837_013395) | - | 3193063..3193797 (+) | 735 | WP_395374068.1 | glutamine amidotransferase | - |
| PN837_RS13400 (PN837_013400) | pilU | 3193802..3194923 (-) | 1122 | WP_395374069.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| PN837_RS13405 (PN837_013405) | pilT | 3194941..3195978 (-) | 1038 | WP_395374070.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| PN837_RS13410 (PN837_013410) | - | 3196093..3196512 (+) | 420 | WP_395374071.1 | DUF192 domain-containing protein | - |
| PN837_RS13415 (PN837_013415) | - | 3196643..3198163 (+) | 1521 | WP_395374072.1 | alanine/glycine:cation symporter family protein | - |
| PN837_RS13420 (PN837_013420) | gap | 3198367..3199371 (+) | 1005 | WP_395374073.1 | type I glyceraldehyde-3-phosphate dehydrogenase | - |
| PN837_RS13425 (PN837_013425) | - | 3199419..3200585 (+) | 1167 | WP_395377896.1 | phosphoglycerate kinase | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 38600.61 Da Isoelectric Point: 6.7761
>NTDB_id=1064430 PN837_RS13405 WP_395374070.1 3194941..3195978(-) (pilT) [Marinicella sp. W31]
MDIAELLAFTVKNKASDLHLSAGLPPMIRVDGDVRRINLPPLEHKELHDMIYDIMSDFQRKEYEEHYEIDFSFEIPGLAR
FRVNAFNQNRGCGAVFRTIPTEILTFEDLNCPAIFKEIIDVPRGLILVTGPTGSGKSTTLAAMVDHINKKEHGHILTIED
PIEFVHTSNKCLVNQREVHRDTKGFENALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVIAQTLIKRVGGGRIAAHEIMVGIPAIRNLIREDKVAQMYSSIQTGQSMGMQTLDQCL
IELVRKGLITRQQARARAMKKADFD
MDIAELLAFTVKNKASDLHLSAGLPPMIRVDGDVRRINLPPLEHKELHDMIYDIMSDFQRKEYEEHYEIDFSFEIPGLAR
FRVNAFNQNRGCGAVFRTIPTEILTFEDLNCPAIFKEIIDVPRGLILVTGPTGSGKSTTLAAMVDHINKKEHGHILTIED
PIEFVHTSNKCLVNQREVHRDTKGFENALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVIAQTLIKRVGGGRIAAHEIMVGIPAIRNLIREDKVAQMYSSIQTGQSMGMQTLDQCL
IELVRKGLITRQQARARAMKKADFD
Nucleotide
Download Length: 1038 bp
>NTDB_id=1064430 PN837_RS13405 WP_395374070.1 3194941..3195978(-) (pilT) [Marinicella sp. W31]
ATGGATATTGCTGAATTGCTTGCATTTACAGTAAAAAACAAAGCCTCAGATTTACACCTTTCAGCCGGTTTACCACCGAT
GATAAGGGTGGATGGTGATGTCAGACGCATCAATTTACCACCTTTGGAACACAAAGAATTGCATGACATGATCTACGATA
TCATGAGCGATTTCCAGCGTAAGGAATATGAGGAGCATTATGAAATTGACTTCTCTTTCGAAATACCTGGTCTGGCGCGT
TTCAGGGTAAATGCATTTAATCAAAACCGTGGTTGTGGTGCTGTTTTCCGTACCATTCCTACAGAGATTCTCACTTTTGA
AGACCTCAATTGCCCTGCCATATTTAAAGAGATCATCGATGTTCCACGCGGATTGATACTGGTGACCGGCCCAACCGGTT
CCGGTAAGTCGACAACGCTTGCAGCCATGGTCGATCACATCAATAAAAAAGAACACGGCCATATCCTGACCATCGAAGAC
CCGATCGAATTCGTACACACCAGTAATAAATGTCTGGTTAATCAACGCGAAGTCCACCGTGACACCAAAGGGTTCGAAAA
CGCACTGCGTTCGGCATTACGTGAAGATCCAGACATCATTCTGGTTGGTGAGTTACGTGATCTTGAGACCATTCGCTTGG
CGCTGACTGCAGCAGAAACCGGTCACTTGGTATTCGGCACATTACACACCAGTTCTGCCGCCAAAACCATTGACCGTATT
ATTGACGTATTCCCGGCTGGTGAAAAACCAATGGTACGCTCAATGCTTTCGGAATCATTGCGCGCAGTTATTGCGCAAAC
CCTGATTAAACGTGTGGGTGGTGGCCGTATCGCAGCACACGAAATTATGGTGGGTATCCCGGCGATTCGAAACCTGATTC
GTGAAGATAAGGTAGCACAAATGTACTCATCCATTCAAACCGGCCAATCTATGGGCATGCAGACCTTGGATCAATGCCTG
ATTGAATTGGTAAGAAAAGGCCTGATCACCCGTCAGCAAGCACGCGCACGGGCTATGAAAAAGGCTGATTTTGATTAA
ATGGATATTGCTGAATTGCTTGCATTTACAGTAAAAAACAAAGCCTCAGATTTACACCTTTCAGCCGGTTTACCACCGAT
GATAAGGGTGGATGGTGATGTCAGACGCATCAATTTACCACCTTTGGAACACAAAGAATTGCATGACATGATCTACGATA
TCATGAGCGATTTCCAGCGTAAGGAATATGAGGAGCATTATGAAATTGACTTCTCTTTCGAAATACCTGGTCTGGCGCGT
TTCAGGGTAAATGCATTTAATCAAAACCGTGGTTGTGGTGCTGTTTTCCGTACCATTCCTACAGAGATTCTCACTTTTGA
AGACCTCAATTGCCCTGCCATATTTAAAGAGATCATCGATGTTCCACGCGGATTGATACTGGTGACCGGCCCAACCGGTT
CCGGTAAGTCGACAACGCTTGCAGCCATGGTCGATCACATCAATAAAAAAGAACACGGCCATATCCTGACCATCGAAGAC
CCGATCGAATTCGTACACACCAGTAATAAATGTCTGGTTAATCAACGCGAAGTCCACCGTGACACCAAAGGGTTCGAAAA
CGCACTGCGTTCGGCATTACGTGAAGATCCAGACATCATTCTGGTTGGTGAGTTACGTGATCTTGAGACCATTCGCTTGG
CGCTGACTGCAGCAGAAACCGGTCACTTGGTATTCGGCACATTACACACCAGTTCTGCCGCCAAAACCATTGACCGTATT
ATTGACGTATTCCCGGCTGGTGAAAAACCAATGGTACGCTCAATGCTTTCGGAATCATTGCGCGCAGTTATTGCGCAAAC
CCTGATTAAACGTGTGGGTGGTGGCCGTATCGCAGCACACGAAATTATGGTGGGTATCCCGGCGATTCGAAACCTGATTC
GTGAAGATAAGGTAGCACAAATGTACTCATCCATTCAAACCGGCCAATCTATGGGCATGCAGACCTTGGATCAATGCCTG
ATTGAATTGGTAAGAAAAGGCCTGATCACCCGTCAGCAAGCACGCGCACGGGCTATGAAAAAGGCTGATTTTGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
77.616 |
99.71 |
0.774 |
| pilT | Pseudomonas stutzeri DSM 10701 |
76.744 |
99.71 |
0.765 |
| pilT | Acinetobacter nosocomialis M2 |
75.581 |
99.71 |
0.754 |
| pilT | Acinetobacter baumannii D1279779 |
75.581 |
99.71 |
0.754 |
| pilT | Acinetobacter baumannii strain A118 |
75.581 |
99.71 |
0.754 |
| pilT | Acinetobacter baylyi ADP1 |
75 |
99.71 |
0.748 |
| pilT | Legionella pneumophila strain Lp02 |
74.709 |
99.71 |
0.745 |
| pilT | Legionella pneumophila strain ERS1305867 |
74.709 |
99.71 |
0.745 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
70.326 |
97.681 |
0.687 |
| pilT | Vibrio cholerae strain A1552 |
70.326 |
97.681 |
0.687 |
| pilT | Neisseria meningitidis 8013 |
66.372 |
98.261 |
0.652 |
| pilT | Neisseria gonorrhoeae MS11 |
66.077 |
98.261 |
0.649 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
49.565 |
100 |
0.496 |
| pilU | Pseudomonas stutzeri DSM 10701 |
41.449 |
100 |
0.414 |
| pilU | Acinetobacter baylyi ADP1 |
40.87 |
100 |
0.409 |
| pilU | Vibrio cholerae strain A1552 |
40.896 |
97.101 |
0.397 |