Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | ACFJI2_RS00890 | Genome accession | NZ_CP170549 |
| Coordinates | 198914..199957 (-) | Length | 347 a.a. |
| NCBI ID | WP_107877283.1 | Uniprot ID | - |
| Organism | Pseudoduganella sp. UC29_71 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 193914..204957
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFJI2_RS00880 (ACFJI2_00880) | - | 197214..197699 (-) | 486 | WP_377703346.1 | glutathione peroxidase | - |
| ACFJI2_RS00885 (ACFJI2_00885) | pilU | 197708..198844 (-) | 1137 | WP_132136366.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ACFJI2_RS00890 (ACFJI2_00890) | pilT | 198914..199957 (-) | 1044 | WP_107877283.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| ACFJI2_RS00895 (ACFJI2_00895) | - | 200026..200748 (+) | 723 | WP_377703347.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| ACFJI2_RS00900 (ACFJI2_00900) | proC | 200758..201672 (+) | 915 | WP_377703348.1 | pyrroline-5-carboxylate reductase | - |
| ACFJI2_RS00905 (ACFJI2_00905) | - | 201838..202191 (-) | 354 | WP_377703349.1 | YqjD family protein | - |
| ACFJI2_RS00910 (ACFJI2_00910) | ubiA | 202249..203103 (-) | 855 | WP_377703350.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| ACFJI2_RS00915 (ACFJI2_00915) | - | 203140..204084 (-) | 945 | WP_107877275.1 | hydrogen peroxide-inducible genes activator | - |
Sequence
Protein
Download Length: 347 a.a. Molecular weight: 38017.68 Da Isoelectric Point: 6.7266
>NTDB_id=1057908 ACFJI2_RS00890 WP_107877283.1 198914..199957(-) (pilT) [Pseudoduganella sp. UC29_71]
MDISELLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINLPPLEHKDVHGMIYDIMNDGQRKAYEEMLECDFSFAIPGLAR
FRVNAYNQERGAAAVLRTIPSKILSLEELNAPKIFAEFALKPRGLVLVTGPTGSGKSTTLAAMINHLNENEYGHILTIED
PIEFVHDSKKCLINQREVGPHTLSFNNALRSALREDPDAILVGELRDLETIRLALSAAETGHLVFGTLHTSSAAKTIDRI
VDVFPAEEKEMVRAMLSESLQAVISQTLLKTKDGSGRVAAHEIMVGTPAIRNLIREAKIAQMYSAIQTGSNVGMQTLDQN
LTDLVRRNLISSAAARNAAKIPDNFPG
MDISELLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINLPPLEHKDVHGMIYDIMNDGQRKAYEEMLECDFSFAIPGLAR
FRVNAYNQERGAAAVLRTIPSKILSLEELNAPKIFAEFALKPRGLVLVTGPTGSGKSTTLAAMINHLNENEYGHILTIED
PIEFVHDSKKCLINQREVGPHTLSFNNALRSALREDPDAILVGELRDLETIRLALSAAETGHLVFGTLHTSSAAKTIDRI
VDVFPAEEKEMVRAMLSESLQAVISQTLLKTKDGSGRVAAHEIMVGTPAIRNLIREAKIAQMYSAIQTGSNVGMQTLDQN
LTDLVRRNLISSAAARNAAKIPDNFPG
Nucleotide
Download Length: 1044 bp
>NTDB_id=1057908 ACFJI2_RS00890 WP_107877283.1 198914..199957(-) (pilT) [Pseudoduganella sp. UC29_71]
ATGGACATCTCCGAATTACTCGCATTCTCCGTCAAGAACAAAGCCTCCGATCTCCACCTGTCCGCCGGCCTGCCGCCGAT
GATCCGCGTGCACGGCGATGTGCGCCGCATCAACCTGCCGCCGCTCGAGCACAAGGACGTGCACGGCATGATCTATGACA
TCATGAATGACGGCCAGCGCAAGGCCTACGAGGAAATGCTGGAGTGCGATTTTTCCTTCGCCATTCCGGGCCTGGCGCGC
TTTCGCGTCAACGCCTACAACCAGGAACGCGGCGCGGCCGCCGTGCTGCGCACCATTCCATCCAAGATCCTCAGCCTGGA
AGAGCTGAACGCGCCCAAGATCTTCGCCGAATTCGCGCTCAAGCCGCGCGGCCTGGTGCTGGTGACGGGGCCGACCGGCT
CCGGCAAGTCCACCACGCTGGCGGCCATGATCAACCACCTCAACGAAAACGAGTACGGCCACATCCTCACCATCGAGGAC
CCGATCGAGTTCGTGCACGATTCCAAGAAGTGCCTGATCAACCAGCGCGAAGTGGGGCCGCACACGCTCTCGTTCAACAA
CGCGCTGCGCTCGGCGCTGCGGGAAGACCCGGACGCCATCCTGGTGGGCGAACTGCGCGACCTGGAAACCATCCGCCTGG
CGCTGTCGGCAGCCGAAACCGGCCACCTGGTGTTCGGCACCCTGCACACCTCCTCCGCCGCCAAGACCATCGACCGCATC
GTCGACGTGTTCCCGGCCGAGGAAAAGGAGATGGTGCGGGCCATGCTGTCCGAATCGCTGCAGGCCGTTATTTCGCAGAC
GCTGCTCAAGACCAAGGACGGCTCCGGCCGCGTGGCCGCGCACGAGATCATGGTCGGCACGCCGGCCATCCGCAACCTGA
TCCGCGAAGCGAAGATCGCGCAGATGTACTCGGCCATCCAGACCGGCAGCAACGTCGGCATGCAGACGCTGGACCAGAAC
CTGACCGACCTGGTACGCCGCAACCTGATCTCGTCCGCCGCCGCGCGCAACGCGGCCAAGATCCCCGATAATTTCCCTGG
CTAA
ATGGACATCTCCGAATTACTCGCATTCTCCGTCAAGAACAAAGCCTCCGATCTCCACCTGTCCGCCGGCCTGCCGCCGAT
GATCCGCGTGCACGGCGATGTGCGCCGCATCAACCTGCCGCCGCTCGAGCACAAGGACGTGCACGGCATGATCTATGACA
TCATGAATGACGGCCAGCGCAAGGCCTACGAGGAAATGCTGGAGTGCGATTTTTCCTTCGCCATTCCGGGCCTGGCGCGC
TTTCGCGTCAACGCCTACAACCAGGAACGCGGCGCGGCCGCCGTGCTGCGCACCATTCCATCCAAGATCCTCAGCCTGGA
AGAGCTGAACGCGCCCAAGATCTTCGCCGAATTCGCGCTCAAGCCGCGCGGCCTGGTGCTGGTGACGGGGCCGACCGGCT
CCGGCAAGTCCACCACGCTGGCGGCCATGATCAACCACCTCAACGAAAACGAGTACGGCCACATCCTCACCATCGAGGAC
CCGATCGAGTTCGTGCACGATTCCAAGAAGTGCCTGATCAACCAGCGCGAAGTGGGGCCGCACACGCTCTCGTTCAACAA
CGCGCTGCGCTCGGCGCTGCGGGAAGACCCGGACGCCATCCTGGTGGGCGAACTGCGCGACCTGGAAACCATCCGCCTGG
CGCTGTCGGCAGCCGAAACCGGCCACCTGGTGTTCGGCACCCTGCACACCTCCTCCGCCGCCAAGACCATCGACCGCATC
GTCGACGTGTTCCCGGCCGAGGAAAAGGAGATGGTGCGGGCCATGCTGTCCGAATCGCTGCAGGCCGTTATTTCGCAGAC
GCTGCTCAAGACCAAGGACGGCTCCGGCCGCGTGGCCGCGCACGAGATCATGGTCGGCACGCCGGCCATCCGCAACCTGA
TCCGCGAAGCGAAGATCGCGCAGATGTACTCGGCCATCCAGACCGGCAGCAACGTCGGCATGCAGACGCTGGACCAGAAC
CTGACCGACCTGGTACGCCGCAACCTGATCTCGTCCGCCGCCGCGCGCAACGCGGCCAAGATCCCCGATAATTTCCCTGG
CTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
76.812 |
99.424 |
0.764 |
| pilT | Acinetobacter nosocomialis M2 |
76.522 |
99.424 |
0.761 |
| pilT | Acinetobacter baumannii D1279779 |
76.522 |
99.424 |
0.761 |
| pilT | Acinetobacter baumannii strain A118 |
76.522 |
99.424 |
0.761 |
| pilT | Pseudomonas stutzeri DSM 10701 |
74.783 |
99.424 |
0.744 |
| pilT | Legionella pneumophila strain Lp02 |
75.811 |
97.695 |
0.741 |
| pilT | Legionella pneumophila strain ERS1305867 |
75.811 |
97.695 |
0.741 |
| pilT | Acinetobacter baylyi ADP1 |
73.913 |
99.424 |
0.735 |
| pilT | Neisseria gonorrhoeae MS11 |
70.588 |
97.983 |
0.692 |
| pilT | Neisseria meningitidis 8013 |
70.588 |
97.983 |
0.692 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
68.373 |
95.677 |
0.654 |
| pilT | Vibrio cholerae strain A1552 |
68.373 |
95.677 |
0.654 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
51.884 |
99.424 |
0.516 |
| pilU | Acinetobacter baylyi ADP1 |
41.908 |
99.712 |
0.418 |
| pilU | Vibrio cholerae strain A1552 |
40.708 |
97.695 |
0.398 |
| pilU | Pseudomonas stutzeri DSM 10701 |
42.284 |
93.372 |
0.395 |