Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ACEJ41_RS03810 Genome accession   NZ_CP169056
Coordinates   815742..816779 (+) Length   345 a.a.
NCBI ID   WP_374013468.1    Uniprot ID   -
Organism   Pseudoxanthomonas koreensis strain TDY-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 810742..821779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEJ41_RS03790 (ACEJ41_03790) - 811448..812293 (+) 846 WP_374013464.1 ABC transporter permease subunit -
  ACEJ41_RS03795 (ACEJ41_03795) - 813218..814081 (+) 864 WP_374013465.1 pirin family protein -
  ACEJ41_RS03800 (ACEJ41_03800) - 814119..814586 (-) 468 WP_374013466.1 DUF4426 domain-containing protein -
  ACEJ41_RS03805 (ACEJ41_03805) proC 814592..815437 (-) 846 WP_374013467.1 pyrroline-5-carboxylate reductase -
  ACEJ41_RS03810 (ACEJ41_03810) pilT 815742..816779 (+) 1038 WP_374013468.1 type IV pilus twitching motility protein PilT Machinery gene
  ACEJ41_RS03815 (ACEJ41_03815) pilU 816830..817960 (+) 1131 WP_374013469.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ACEJ41_RS03820 (ACEJ41_03820) - 818001..819809 (-) 1809 WP_374013470.1 DUF4153 domain-containing protein -
  ACEJ41_RS03825 (ACEJ41_03825) - 819890..820456 (+) 567 WP_374013471.1 YqgE/AlgH family protein -
  ACEJ41_RS03830 (ACEJ41_03830) ruvX 820449..820922 (+) 474 WP_374013472.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38606.34 Da        Isoelectric Point: 6.6653

>NTDB_id=1049593 ACEJ41_RS03810 WP_374013468.1 815742..816779(+) (pilT) [Pseudoxanthomonas koreensis strain TDY-1]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLSLEDLGCPPIFRELIQQPQGLILVTGPTGSGKSTTLAAMVDFVNKNEYAHILTVED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDYILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSAIQTGQQYGMMTLDQHL
QDLVKRGLVTRQQAKEYAKDKRLFE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1049593 ACEJ41_RS03810 WP_374013468.1 815742..816779(+) (pilT) [Pseudoxanthomonas koreensis strain TDY-1]
ATGGATATCGCCGAACTGCTGGCGTTCTCGGTCAAGAACAAGGCGTCCGACCTGCACCTGTCCGCCGGGCTGCCGCCGAT
GATCCGCGTCGACGGCGACGTGCGCCGGATCAACATCCCGGCGCTGGACCACAAGCAGGTGCACGCGCTGGTGTACGACA
TCATGTCGGACAAGCAGCGCCGCGACTACGAGGAATTCCTCGAGGTCGACTTCTCCTTCGAGATCCCCTCGCTGGCGCGT
TTCCGCGTCAATGCGTTCAACCAGAACCGCGGCGCCGGCGCCGTGTTCCGCACCATTCCCTCCGAGGTGCTGAGCCTGGA
GGACCTGGGCTGCCCGCCGATCTTCCGCGAGCTGATCCAGCAGCCGCAGGGCCTGATCCTGGTCACCGGCCCCACCGGCT
CGGGTAAGTCCACCACGCTGGCGGCGATGGTCGATTTCGTCAACAAGAACGAATACGCCCACATCCTCACCGTCGAGGAC
CCGATCGAGTTCGTGCACACCTCGCAGAAGTGCCTGATCAACCAGCGCGAAGTGCATCGCGATACCCACGGCTTCAACGA
AGCCCTGCGCTCGGCGCTGCGCGAGGACCCCGACTACATCCTGGTGGGCGAGTTGCGCGACCTGGAGACCATCCGCCTGG
CGCTGACCGCCGCGGAAACCGGCCACCTGGTGTTCGGCACCCTGCATACCAGTTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCGGCCGGCGAGAAGCCGATGGTGCGCTCGATGCTGTCCGAGTCGCTGCGCGCGGTGATCAGCCAGGC
GTTGCTGAAGAAGGTCGGCGGCGGGCGTACCGCAGCCTGGGAAATCATGGTCGGCACCCCGGCCATCCGCAACCTGATCC
GCGAGGACAAGGTCGCGCAGATGTACTCGGCCATCCAGACCGGCCAGCAGTACGGCATGATGACCCTGGACCAGCACCTG
CAGGACCTGGTCAAGCGTGGCCTGGTCACCCGCCAGCAGGCCAAGGAATACGCCAAGGACAAGCGCCTTTTCGAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baumannii D1279779

79.07

99.71

0.788
  pilT Acinetobacter baumannii strain A118

79.07

99.71

0.788
  pilT Acinetobacter nosocomialis M2

79.07

99.71

0.788
  pilT Pseudomonas stutzeri DSM 10701

78.198

99.71

0.78
  pilT Acinetobacter baylyi ADP1

77.035

99.71

0.768
  pilT Pseudomonas aeruginosa PAK

77.876

98.261

0.765
  pilT Legionella pneumophila strain Lp02

74.419

99.71

0.742
  pilT Legionella pneumophila strain ERS1305867

74.419

99.71

0.742
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

70.746

97.101

0.687
  pilT Vibrio cholerae strain A1552

70.746

97.101

0.687
  pilT Neisseria meningitidis 8013

65.396

98.841

0.646
  pilT Neisseria gonorrhoeae MS11

65.103

98.841

0.643
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.696

100

0.487
  pilU Vibrio cholerae strain A1552

39.368

100

0.397
  pilU Acinetobacter baylyi ADP1

39.706

98.551

0.391
  pilU Pseudomonas stutzeri DSM 10701

39.528

98.261

0.388

Multiple sequence alignment