Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | ACEJ41_RS03815 | Genome accession | NZ_CP169056 |
| Coordinates | 816830..817960 (+) | Length | 376 a.a. |
| NCBI ID | WP_374013469.1 | Uniprot ID | - |
| Organism | Pseudoxanthomonas koreensis strain TDY-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 811830..822960
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACEJ41_RS03795 (ACEJ41_03795) | - | 813218..814081 (+) | 864 | WP_374013465.1 | pirin family protein | - |
| ACEJ41_RS03800 (ACEJ41_03800) | - | 814119..814586 (-) | 468 | WP_374013466.1 | DUF4426 domain-containing protein | - |
| ACEJ41_RS03805 (ACEJ41_03805) | proC | 814592..815437 (-) | 846 | WP_374013467.1 | pyrroline-5-carboxylate reductase | - |
| ACEJ41_RS03810 (ACEJ41_03810) | pilT | 815742..816779 (+) | 1038 | WP_374013468.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| ACEJ41_RS03815 (ACEJ41_03815) | pilU | 816830..817960 (+) | 1131 | WP_374013469.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ACEJ41_RS03820 (ACEJ41_03820) | - | 818001..819809 (-) | 1809 | WP_374013470.1 | DUF4153 domain-containing protein | - |
| ACEJ41_RS03825 (ACEJ41_03825) | - | 819890..820456 (+) | 567 | WP_374013471.1 | YqgE/AlgH family protein | - |
| ACEJ41_RS03830 (ACEJ41_03830) | ruvX | 820449..820922 (+) | 474 | WP_374013472.1 | Holliday junction resolvase RuvX | - |
| ACEJ41_RS03835 (ACEJ41_03835) | - | 821038..821982 (+) | 945 | WP_374013473.1 | aspartate carbamoyltransferase catalytic subunit | - |
Sequence
Protein
Download Length: 376 a.a. Molecular weight: 41880.16 Da Isoelectric Point: 6.8287
>NTDB_id=1049594 ACEJ41_RS03815 WP_374013469.1 816830..817960(+) (pilU) [Pseudoxanthomonas koreensis strain TDY-1]
MSTIDFTSFLKLMAHQRASDLFITAGMPPAMKVHGKISPITQTPLTPQQSRDLVLNVMTPAQREEFEKTHECNFAIGVSG
VGRFRVSCFYQRNQVGMVLRRIETKIPTVEELNLPPVIKTLAMTKRGIIIFVGATGTGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEFVHKHEGCIITQREVGIDTDSWDNALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLCTLHANNANQAM
DRIINFFPEDRRGQLLMDLSLNLKGVVAQQLVPTPDGKGRRVAMEILLGTPLVQDYIRDGEVHKLKEVMKESTNLGMKTF
DQSLFELYQAGEISYEDALRFADSQNEVRLRIKLSQGGDARTLAQGMDGVEISETR
MSTIDFTSFLKLMAHQRASDLFITAGMPPAMKVHGKISPITQTPLTPQQSRDLVLNVMTPAQREEFEKTHECNFAIGVSG
VGRFRVSCFYQRNQVGMVLRRIETKIPTVEELNLPPVIKTLAMTKRGIIIFVGATGTGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEFVHKHEGCIITQREVGIDTDSWDNALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLCTLHANNANQAM
DRIINFFPEDRRGQLLMDLSLNLKGVVAQQLVPTPDGKGRRVAMEILLGTPLVQDYIRDGEVHKLKEVMKESTNLGMKTF
DQSLFELYQAGEISYEDALRFADSQNEVRLRIKLSQGGDARTLAQGMDGVEISETR
Nucleotide
Download Length: 1131 bp
>NTDB_id=1049594 ACEJ41_RS03815 WP_374013469.1 816830..817960(+) (pilU) [Pseudoxanthomonas koreensis strain TDY-1]
ATGAGCACCATCGACTTCACCTCGTTCCTCAAGCTGATGGCGCACCAGCGGGCGTCGGACCTGTTCATCACCGCGGGCAT
GCCGCCGGCGATGAAGGTGCACGGCAAGATCAGCCCGATCACGCAGACGCCGCTGACCCCGCAGCAGAGCCGCGACCTGG
TGCTGAACGTGATGACGCCGGCCCAGCGCGAGGAGTTCGAGAAGACCCACGAGTGCAACTTCGCCATCGGCGTGTCGGGC
GTGGGCCGCTTCCGCGTGAGCTGCTTCTACCAGCGCAACCAGGTGGGCATGGTGCTGCGCCGGATCGAGACCAAGATCCC
GACCGTGGAAGAGCTGAACCTGCCGCCGGTGATCAAGACCCTGGCGATGACCAAGCGCGGCATCATCATCTTCGTCGGCG
CCACCGGCACGGGTAAATCCACCTCGCTGGCGGCGATGATCGGCTACCGCAACCAGAACTCCACCGGGCACATCATCACC
ATCGAGGACCCGATCGAGTTCGTGCACAAGCACGAAGGCTGCATCATCACCCAGCGCGAGGTCGGCATCGACACCGACAG
CTGGGACAACGCGCTCAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGCACCCGCGAGGGCA
TGGACCACGCCATCGCCTTCGCCGAAACCGGCCACCTGGTGCTGTGCACCCTGCACGCCAACAACGCCAACCAGGCGATG
GACCGCATCATCAACTTCTTCCCCGAGGACCGGCGCGGCCAGTTGTTGATGGACCTGTCGCTCAACCTCAAGGGCGTGGT
CGCCCAGCAGCTGGTGCCCACCCCGGACGGCAAGGGCCGCCGGGTGGCGATGGAAATCCTGCTCGGCACGCCGCTGGTGC
AGGACTACATCCGCGACGGCGAGGTCCACAAGCTCAAGGAAGTGATGAAGGAATCCACCAACCTGGGCATGAAGACCTTC
GACCAGAGCCTGTTCGAGCTGTACCAGGCCGGCGAGATCAGCTACGAGGACGCGCTGCGCTTTGCCGACTCGCAGAACGA
GGTGCGCCTGCGGATCAAGCTTTCCCAGGGCGGCGACGCGCGGACCCTGGCCCAGGGCATGGACGGGGTGGAGATCTCCG
AGACCCGCTGA
ATGAGCACCATCGACTTCACCTCGTTCCTCAAGCTGATGGCGCACCAGCGGGCGTCGGACCTGTTCATCACCGCGGGCAT
GCCGCCGGCGATGAAGGTGCACGGCAAGATCAGCCCGATCACGCAGACGCCGCTGACCCCGCAGCAGAGCCGCGACCTGG
TGCTGAACGTGATGACGCCGGCCCAGCGCGAGGAGTTCGAGAAGACCCACGAGTGCAACTTCGCCATCGGCGTGTCGGGC
GTGGGCCGCTTCCGCGTGAGCTGCTTCTACCAGCGCAACCAGGTGGGCATGGTGCTGCGCCGGATCGAGACCAAGATCCC
GACCGTGGAAGAGCTGAACCTGCCGCCGGTGATCAAGACCCTGGCGATGACCAAGCGCGGCATCATCATCTTCGTCGGCG
CCACCGGCACGGGTAAATCCACCTCGCTGGCGGCGATGATCGGCTACCGCAACCAGAACTCCACCGGGCACATCATCACC
ATCGAGGACCCGATCGAGTTCGTGCACAAGCACGAAGGCTGCATCATCACCCAGCGCGAGGTCGGCATCGACACCGACAG
CTGGGACAACGCGCTCAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGCACCCGCGAGGGCA
TGGACCACGCCATCGCCTTCGCCGAAACCGGCCACCTGGTGCTGTGCACCCTGCACGCCAACAACGCCAACCAGGCGATG
GACCGCATCATCAACTTCTTCCCCGAGGACCGGCGCGGCCAGTTGTTGATGGACCTGTCGCTCAACCTCAAGGGCGTGGT
CGCCCAGCAGCTGGTGCCCACCCCGGACGGCAAGGGCCGCCGGGTGGCGATGGAAATCCTGCTCGGCACGCCGCTGGTGC
AGGACTACATCCGCGACGGCGAGGTCCACAAGCTCAAGGAAGTGATGAAGGAATCCACCAACCTGGGCATGAAGACCTTC
GACCAGAGCCTGTTCGAGCTGTACCAGGCCGGCGAGATCAGCTACGAGGACGCGCTGCGCTTTGCCGACTCGCAGAACGA
GGTGCGCCTGCGGATCAAGCTTTCCCAGGGCGGCGACGCGCGGACCCTGGCCCAGGGCATGGACGGGGTGGAGATCTCCG
AGACCCGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
67.751 |
98.138 |
0.665 |
| pilU | Acinetobacter baylyi ADP1 |
63.585 |
94.947 |
0.604 |
| pilU | Vibrio cholerae strain A1552 |
53.652 |
94.681 |
0.508 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.857 |
94.947 |
0.407 |
| pilT | Acinetobacter baumannii strain A118 |
40.698 |
91.489 |
0.372 |
| pilT | Acinetobacter nosocomialis M2 |
40.698 |
91.489 |
0.372 |
| pilT | Acinetobacter baumannii D1279779 |
40.698 |
91.489 |
0.372 |
| pilT | Pseudomonas aeruginosa PAK |
41.194 |
89.096 |
0.367 |