Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ACDH70_RS19820 Genome accession   NZ_CP167865
Coordinates   4651762..4652799 (+) Length   345 a.a.
NCBI ID   WP_104543511.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. poinsettiicola strain NCPPB:1939     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4646762..4657799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDH70_RS19790 (ACDH70_19790) - 4647138..4647485 (-) 348 WP_228962870.1 hypothetical protein -
  ACDH70_RS19795 (ACDH70_19795) - 4647736..4648038 (-) 303 WP_104543504.1 DUF3861 family protein -
  ACDH70_RS19800 (ACDH70_19800) - 4648129..4648710 (-) 582 WP_228962840.1 M23 family metallopeptidase -
  ACDH70_RS19805 (ACDH70_19805) - 4648861..4649283 (-) 423 WP_104543508.1 HU family DNA-binding protein -
  ACDH70_RS19810 (ACDH70_19810) proC 4649828..4650679 (-) 852 WP_228962841.1 pyrroline-5-carboxylate reductase -
  ACDH70_RS19815 (ACDH70_19815) - 4650728..4651420 (-) 693 WP_228962842.1 YggS family pyridoxal phosphate-dependent enzyme -
  ACDH70_RS19820 (ACDH70_19820) pilT 4651762..4652799 (+) 1038 WP_104543511.1 type IV pilus twitching motility protein PilT Machinery gene
  ACDH70_RS19825 (ACDH70_19825) pilU 4652912..4654042 (+) 1131 WP_029218821.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ACDH70_RS19830 (ACDH70_19830) - 4654054..4654314 (+) 261 WP_228962843.1 hypothetical protein -
  ACDH70_RS19835 (ACDH70_19835) - 4654363..4654632 (+) 270 WP_228962844.1 hypothetical protein -
  ACDH70_RS19840 (ACDH70_19840) - 4654907..4655581 (+) 675 WP_228962871.1 YitT family protein -
  ACDH70_RS19845 (ACDH70_19845) - 4655711..4656250 (-) 540 WP_228962845.1 DNA-3-methyladenine glycosylase I -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38627.30 Da        Isoelectric Point: 6.6652

>NTDB_id=1040014 ACDH70_RS19820 WP_104543511.1 4651762..4652799(+) (pilT) [Xanthomonas axonopodis pv. poinsettiicola strain NCPPB:1939]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGCPPIFRQLIDQPQGLILVTGPTGSGKSTTLAGMIDYINKNEYGHILTVED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSAIQTGQQYGMQTLDQHL
QDLVKRSLITRNQAREYAKDKRIFE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1040014 ACDH70_RS19820 WP_104543511.1 4651762..4652799(+) (pilT) [Xanthomonas axonopodis pv. poinsettiicola strain NCPPB:1939]
ATGGATATCGCTGAACTATTGGCGTTTTCTGTCAAGAACAAGGCATCGGACCTGCACCTGTCTGCAGGGCTGCCGCCGAT
GATCCGTGTCGATGGCGATGTCCGTCGCATCAATATTCCGGCGCTGGACCACAAGCAGGTGCACGCGCTGGTATACGACA
TCATGTCGGACAAGCAGCGCCGCGACTACGAAGAATTCCTCGAGGTCGATTTCTCGTTCGAGATTCCCTCGCTGGCACGT
TTCCGCGTCAATGCGTTCAACCAGAACCGCGGTGCCGGTGCGGTGTTCCGTACCATTCCTTCCGAAGTGCTGACGCTGGA
AGACCTGGGCTGCCCGCCGATCTTCCGCCAGCTGATCGACCAGCCGCAGGGGCTGATCCTGGTGACCGGCCCGACCGGGT
CGGGCAAGTCGACCACCCTGGCCGGCATGATCGATTACATCAACAAGAACGAATACGGCCATATCCTCACCGTCGAGGAT
CCGATCGAGTTCGTGCACACCTCGCAGAAGTGCCTGATCAACCAGCGCGAAGTGCACCGCGACACGCACGGCTTCAACGA
GGCGCTGCGTTCGGCACTGCGCGAAGACCCGGACATCATCCTGGTCGGCGAATTGCGCGACCTGGAGACCATCCGCCTGG
CGCTGACCGCCGCGGAAACCGGCCACCTGGTGTTCGGCACCCTGCACACCAGCTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCGGCCGGCGAAAAGCCGATGGTGCGCTCGATGCTGTCCGAATCGCTGCGCGCGGTGATTTCGCAGGC
GCTGCTGAAAAAAGTCGGCGGCGGACGCACGGCGGCGTGGGAGATCATGGTCGGCACCCCGGCCATCCGCAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTATTCGGCGATCCAGACCGGCCAGCAATACGGCATGCAGACCCTGGACCAGCATCTG
CAGGACCTGGTCAAGCGCAGCCTGATCACGCGCAACCAGGCGCGCGAATACGCCAAGGACAAGCGGATATTCGAGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

80.233

99.71

0.8
  pilT Acinetobacter baumannii D1279779

80.233

99.71

0.8
  pilT Acinetobacter baumannii strain A118

80.233

99.71

0.8
  pilT Pseudomonas stutzeri DSM 10701

79.07

99.71

0.788
  pilT Acinetobacter baylyi ADP1

78.488

99.71

0.783
  pilT Pseudomonas aeruginosa PAK

79.351

98.261

0.78
  pilT Legionella pneumophila strain Lp02

75

99.71

0.748
  pilT Legionella pneumophila strain ERS1305867

75

99.71

0.748
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.125

95.362

0.678
  pilT Vibrio cholerae strain A1552

71.125

95.362

0.678
  pilT Neisseria meningitidis 8013

65.982

98.841

0.652
  pilT Neisseria gonorrhoeae MS11

65.689

98.841

0.649
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.855

100

0.499
  pilU Pseudomonas stutzeri DSM 10701

40.708

98.261

0.4
  pilU Acinetobacter baylyi ADP1

40.294

98.551

0.397
  pilU Vibrio cholerae strain A1552

40.597

97.101

0.394

Multiple sequence alignment