Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ACCQ12_RS13550 Genome accession   NZ_CP167863
Coordinates   3198244..3199281 (-) Length   345 a.a.
NCBI ID   WP_104543511.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 1068     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3193244..3204281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ12_RS13525 (ACCQ12_13525) - 3193627..3194193 (-) 567 WP_039404799.1 YqgE/AlgH family protein -
  ACCQ12_RS13530 (ACCQ12_13530) - 3194502..3195068 (+) 567 WP_372381962.1 DNA-3-methyladenine glycosylase I -
  ACCQ12_RS13535 (ACCQ12_13535) - 3195105..3196004 (+) 900 WP_355604317.1 DUF72 domain-containing protein -
  ACCQ12_RS13540 (ACCQ12_13540) - 3196017..3196691 (-) 675 WP_372383617.1 YitT family protein -
  ACCQ12_RS13545 (ACCQ12_13545) pilU 3196991..3198121 (-) 1131 WP_016902355.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ACCQ12_RS13550 (ACCQ12_13550) pilT 3198244..3199281 (-) 1038 WP_104543511.1 type IV pilus twitching motility protein PilT Machinery gene
  ACCQ12_RS13555 (ACCQ12_13555) - 3199609..3200301 (+) 693 WP_355581652.1 YggS family pyridoxal phosphate-dependent enzyme -
  ACCQ12_RS13560 (ACCQ12_13560) proC 3200345..3201199 (+) 855 WP_372381963.1 pyrroline-5-carboxylate reductase -
  ACCQ12_RS13565 (ACCQ12_13565) - 3201756..3202175 (+) 420 WP_039404742.1 HU family DNA-binding protein -
  ACCQ12_RS13570 (ACCQ12_13570) - 3202326..3202910 (+) 585 WP_355604323.1 M23 family metallopeptidase -
  ACCQ12_RS13575 (ACCQ12_13575) - 3203002..3203304 (+) 303 WP_047693789.1 DUF3861 family protein -
  ACCQ12_RS13580 (ACCQ12_13580) - 3203362..3203904 (+) 543 WP_047693791.1 hypothetical protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38627.30 Da        Isoelectric Point: 6.6652

>NTDB_id=1039968 ACCQ12_RS13550 WP_104543511.1 3198244..3199281(-) (pilT) [Xanthomonas sp. NCPPB 1068]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGCPPIFRQLIDQPQGLILVTGPTGSGKSTTLAGMIDYINKNEYGHILTVED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSAIQTGQQYGMQTLDQHL
QDLVKRSLITRNQAREYAKDKRIFE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1039968 ACCQ12_RS13550 WP_104543511.1 3198244..3199281(-) (pilT) [Xanthomonas sp. NCPPB 1068]
ATGGATATCGCTGAACTATTGGCGTTTTCTGTCAAGAACAAGGCATCGGACCTGCACCTGTCTGCAGGGCTGCCGCCGAT
GATCCGTGTCGATGGCGATGTCCGCCGCATCAATATTCCGGCGCTGGACCACAAGCAGGTGCATGCGCTGGTCTACGACA
TCATGTCGGACAAGCAGCGCCGCGATTACGAAGAATTCCTCGAGGTCGACTTCTCGTTCGAGATTCCGTCGCTGGCGCGC
TTCCGCGTCAATGCGTTCAACCAGAACCGCGGCGCCGGTGCGGTGTTCCGTACCATTCCCTCCGAAGTGCTGACGCTGGA
AGACCTGGGCTGCCCGCCGATCTTCCGCCAGCTGATCGACCAGCCGCAGGGCCTGATCCTGGTCACCGGCCCCACCGGGT
CGGGCAAGTCGACCACGCTGGCCGGCATGATCGACTACATCAACAAGAACGAATACGGCCACATCCTCACTGTCGAGGAC
CCGATCGAATTCGTGCACACCTCACAGAAGTGCCTGATCAACCAGCGCGAAGTGCACCGCGACACGCACGGCTTCAACGA
GGCGCTGCGCTCGGCGTTGCGCGAAGACCCGGACATCATCCTGGTGGGCGAATTGCGCGACCTGGAGACCATCCGCCTGG
CGCTCACCGCCGCGGAAACCGGCCACCTGGTGTTCGGCACCCTGCACACCAGCTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTTTTCCCGGCCGGCGAGAAGCCGATGGTGCGCTCGATGCTGTCCGAGTCGCTGCGCGCGGTCATTTCGCAGGC
GCTGCTGAAGAAGGTGGGCGGCGGCCGTACGGCGGCCTGGGAAATCATGGTCGGCACCCCGGCCATCCGTAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTATTCGGCGATCCAGACCGGCCAGCAGTACGGCATGCAGACGCTGGACCAGCATCTG
CAGGACCTGGTCAAGCGCAGCCTGATCACGCGCAACCAGGCGCGTGAGTACGCCAAGGACAAGCGGATATTCGAGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

80.233

99.71

0.8
  pilT Acinetobacter baumannii D1279779

80.233

99.71

0.8
  pilT Acinetobacter baumannii strain A118

80.233

99.71

0.8
  pilT Pseudomonas stutzeri DSM 10701

79.07

99.71

0.788
  pilT Acinetobacter baylyi ADP1

78.488

99.71

0.783
  pilT Pseudomonas aeruginosa PAK

79.351

98.261

0.78
  pilT Legionella pneumophila strain Lp02

75

99.71

0.748
  pilT Legionella pneumophila strain ERS1305867

75

99.71

0.748
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.125

95.362

0.678
  pilT Vibrio cholerae strain A1552

71.125

95.362

0.678
  pilT Neisseria meningitidis 8013

65.982

98.841

0.652
  pilT Neisseria gonorrhoeae MS11

65.689

98.841

0.649
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.855

100

0.499
  pilU Pseudomonas stutzeri DSM 10701

40.708

98.261

0.4
  pilU Acinetobacter baylyi ADP1

40.294

98.551

0.397
  pilU Vibrio cholerae strain A1552

40.597

97.101

0.394

Multiple sequence alignment