Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ACCQ05_RS07105 Genome accession   NZ_CP167846
Coordinates   1684605..1685642 (+) Length   345 a.a.
NCBI ID   WP_372393349.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 3582     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1679605..1690642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ05_RS07075 (ACCQ05_07075) - 1679983..1680330 (-) 348 WP_104543573.1 hypothetical protein -
  ACCQ05_RS07080 (ACCQ05_07080) - 1680580..1680882 (-) 303 WP_372393346.1 DUF3861 domain-containing protein -
  ACCQ05_RS07085 (ACCQ05_07085) - 1680973..1681554 (-) 582 WP_372393347.1 M23 family metallopeptidase -
  ACCQ05_RS07090 (ACCQ05_07090) - 1681704..1682126 (-) 423 WP_104543508.1 HU family DNA-binding protein -
  ACCQ05_RS07095 (ACCQ05_07095) proC 1682671..1683522 (-) 852 WP_372393348.1 pyrroline-5-carboxylate reductase -
  ACCQ05_RS07100 (ACCQ05_07100) - 1683571..1684263 (-) 693 WP_228962842.1 YggS family pyridoxal phosphate-dependent enzyme -
  ACCQ05_RS07105 (ACCQ05_07105) pilT 1684605..1685642 (+) 1038 WP_372393349.1 type IV pilus twitching motility protein PilT Machinery gene
  ACCQ05_RS07110 (ACCQ05_07110) pilU 1685748..1686878 (+) 1131 WP_029218821.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ACCQ05_RS07115 (ACCQ05_07115) - 1686875..1687468 (+) 594 WP_372393351.1 MFS transporter permease -
  ACCQ05_RS07120 (ACCQ05_07120) - 1687745..1688419 (+) 675 WP_228962871.1 YitT family protein -
  ACCQ05_RS07125 (ACCQ05_07125) - 1688549..1689088 (-) 540 WP_228962845.1 DNA-3-methyladenine glycosylase I -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38611.25 Da        Isoelectric Point: 6.6652

>NTDB_id=1039797 ACCQ05_RS07105 WP_372393349.1 1684605..1685642(+) (pilT) [Xanthomonas sp. NCPPB 3582]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGCPPIFRQLIDQPQGLILVTGPTGSGKSTTLAGMIDYINKNEYGHILTVED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMPSESLRAVISQALLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSAIQTGQQYGMQTLDQHL
QDLVKRSLITRNQAREYAKDKRIFE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1039797 ACCQ05_RS07105 WP_372393349.1 1684605..1685642(+) (pilT) [Xanthomonas sp. NCPPB 3582]
ATGGATATCGCTGAACTATTGGCGTTTTCTGTCAAGAACAAGGCATCGGACCTGCACCTGTCTGCAGGGCTGCCGCCGAT
GATCCGTGTCGATGGCGATGTCCGTCGCATCAATATTCCGGCGCTGGACCACAAGCAGGTGCACGCGCTGGTATACGACA
TCATGTCGGACAAGCAGCGCCGCGACTACGAAGAATTCCTCGAGGTCGATTTCTCGTTCGAGATTCCCTCGCTGGCACGT
TTCCGCGTCAATGCGTTCAACCAGAACCGCGGTGCCGGTGCGGTGTTCCGTACCATTCCCTCCGAAGTGCTGACGCTGGA
AGACCTGGGCTGCCCGCCGATCTTCCGCCAGCTGATCGACCAGCCGCAGGGGCTGATCCTGGTGACCGGCCCGACCGGGT
CGGGCAAGTCGACCACCCTGGCCGGCATGATCGATTACATCAACAAGAACGAATACGGCCATATCCTCACCGTCGAGGAT
CCGATCGAGTTCGTGCACACCTCGCAGAAGTGCCTGATCAACCAGCGCGAAGTGCACCGCGACACGCACGGCTTCAACGA
GGCGCTGCGTTCGGCACTGCGCGAAGACCCGGACATCATCCTGGTCGGCGAATTGCGCGACCTGGAGACCATCCGCCTGG
CGCTGACCGCCGCGGAAACCGGCCACCTGGTGTTCGGCACCCTGCACACCAGCTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCGGCCGGCGAAAAGCCGATGGTGCGCTCGATGCCGTCCGAATCGCTGCGCGCGGTGATTTCGCAGGC
GCTGCTGAAAAAAGTCGGCGGCGGACGCACGGCGGCGTGGGAGATCATGGTCGGCACCCCGGCCATCCGCAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTATTCGGCGATCCAGACCGGCCAGCAATACGGCATGCAGACCCTGGACCAGCATCTG
CAGGACCTGGTCAAGCGCAGCCTGATCACGCGCAACCAGGCGCGCGAATACGCCAAGGACAAGCGGATATTCGAGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

79.942

99.71

0.797
  pilT Acinetobacter baumannii D1279779

79.942

99.71

0.797
  pilT Acinetobacter baumannii strain A118

79.942

99.71

0.797
  pilT Pseudomonas stutzeri DSM 10701

78.779

99.71

0.786
  pilT Acinetobacter baylyi ADP1

78.198

99.71

0.78
  pilT Pseudomonas aeruginosa PAK

79.056

98.261

0.777
  pilT Legionella pneumophila strain Lp02

74.709

99.71

0.745
  pilT Legionella pneumophila strain ERS1305867

74.709

99.71

0.745
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

70.821

95.362

0.675
  pilT Vibrio cholerae strain A1552

70.821

95.362

0.675
  pilT Neisseria meningitidis 8013

65.689

98.841

0.649
  pilT Neisseria gonorrhoeae MS11

65.396

98.841

0.646
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.565

100

0.496
  pilU Pseudomonas stutzeri DSM 10701

40.413

98.261

0.397
  pilU Acinetobacter baylyi ADP1

40

98.551

0.394
  pilU Vibrio cholerae strain A1552

40.299

97.101

0.391

Multiple sequence alignment