Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   ABRP16_RS01115 Genome accession   NZ_CP167825
Coordinates   253373..253765 (-) Length   130 a.a.
NCBI ID   WP_349998559.1    Uniprot ID   -
Organism   Stenotrophomonas lacuserhaii strain WHRI 8086     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 248373..258765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRP16_RS01100 (ABRP16_001100) - 248413..248700 (-) 288 WP_349998556.1 hypothetical protein -
  ABRP16_RS01105 (ABRP16_001105) - 248697..249113 (-) 417 WP_349998557.1 hypothetical protein -
  ABRP16_RS01110 (ABRP16_001110) - 250002..253004 (-) 3003 WP_349998558.1 fused MFS/spermidine synthase -
  ABRP16_RS01115 (ABRP16_001115) comP 253373..253765 (-) 393 WP_349998559.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ABRP16_RS01120 (ABRP16_001120) pilC 254121..255380 (+) 1260 WP_349998560.1 type II secretion system F family protein Machinery gene
  ABRP16_RS01125 (ABRP16_001125) - 255384..256247 (+) 864 WP_349998561.1 A24 family peptidase -
  ABRP16_RS01130 (ABRP16_001130) coaE 256244..256861 (+) 618 WP_349998562.1 dephospho-CoA kinase -
  ABRP16_RS01135 (ABRP16_001135) - 256889..257641 (-) 753 WP_349998563.1 hypothetical protein -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 12976.78 Da        Isoelectric Point: 4.1796

>NTDB_id=1039613 ABRP16_RS01115 WP_349998559.1 253373..253765(-) (comP) [Stenotrophomonas lacuserhaii strain WHRI 8086]
MKNQKGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKVSEGAVIASGAKATVGENIASGAADDCAGVNVGTVNMTTLTC
DGGTLTAAVATGTSAGTITLVFAPTEAATGVSWACTSESDDKFVPAECRG

Nucleotide


Download         Length: 393 bp        

>NTDB_id=1039613 ABRP16_RS01115 WP_349998559.1 253373..253765(-) (comP) [Stenotrophomonas lacuserhaii strain WHRI 8086]
ATGAAGAACCAGAAGGGCTTTACCCTGATCGAACTGATGATCGTTGTTGCGATCATCGCCATCCTGGCCGCCATCGCTCT
GCCGGCTTACCAGGACTACACCACCCGCGCCAAGGTGTCGGAAGGTGCGGTCATTGCCAGCGGCGCCAAGGCGACCGTCG
GTGAAAACATTGCCTCGGGCGCTGCAGATGACTGCGCCGGTGTCAACGTTGGCACTGTCAACATGACCACCCTGACCTGC
GACGGCGGCACGCTGACCGCTGCTGTTGCTACCGGCACCAGCGCTGGCACCATCACTCTGGTGTTCGCTCCGACCGAAGC
AGCGACCGGCGTGTCCTGGGCTTGCACCAGCGAATCCGATGACAAGTTCGTGCCGGCTGAATGCCGCGGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

48.299

100

0.546
  pilA Ralstonia pseudosolanacearum GMI1000

42.767

100

0.523
  pilA2 Legionella pneumophila str. Paris

44.138

100

0.492
  pilA2 Legionella pneumophila strain ERS1305867

45.714

100

0.492
  pilA/pilAI Pseudomonas stutzeri DSM 10701

42.754

100

0.454
  pilA/pilA1 Eikenella corrodens VA1

39.073

100

0.454
  pilE Neisseria gonorrhoeae MS11

36.306

100

0.438
  pilA Vibrio campbellii strain DS40M4

40

100

0.431
  pilA Haemophilus influenzae 86-028NP

41.045

100

0.423
  pilA Pseudomonas aeruginosa PAK

36.242

100

0.415
  pilA Acinetobacter baumannii strain A118

39.416

100

0.415
  pilA Vibrio parahaemolyticus RIMD 2210633

39.695

100

0.4
  pilA Vibrio cholerae strain A1552

34.043

100

0.369
  pilA Vibrio cholerae C6706

34.043

100

0.369
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

34.043

100

0.369
  pilA/pilAII Pseudomonas stutzeri DSM 10701

35.036

100

0.369

Multiple sequence alignment