Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABRP16_RS01120 Genome accession   NZ_CP167825
Coordinates   254121..255380 (+) Length   419 a.a.
NCBI ID   WP_349998560.1    Uniprot ID   -
Organism   Stenotrophomonas lacuserhaii strain WHRI 8086     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 249121..260380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRP16_RS01110 (ABRP16_001110) - 250002..253004 (-) 3003 WP_349998558.1 fused MFS/spermidine synthase -
  ABRP16_RS01115 (ABRP16_001115) comP 253373..253765 (-) 393 WP_349998559.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ABRP16_RS01120 (ABRP16_001120) pilC 254121..255380 (+) 1260 WP_349998560.1 type II secretion system F family protein Machinery gene
  ABRP16_RS01125 (ABRP16_001125) - 255384..256247 (+) 864 WP_349998561.1 A24 family peptidase -
  ABRP16_RS01130 (ABRP16_001130) coaE 256244..256861 (+) 618 WP_349998562.1 dephospho-CoA kinase -
  ABRP16_RS01135 (ABRP16_001135) - 256889..257641 (-) 753 WP_349998563.1 hypothetical protein -
  ABRP16_RS01140 (ABRP16_001140) - 258079..259422 (-) 1344 WP_101100953.1 HAMP domain-containing sensor histidine kinase -
  ABRP16_RS01145 (ABRP16_001145) - 259415..260092 (-) 678 WP_057687381.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45842.39 Da        Isoelectric Point: 10.3002

>NTDB_id=1039614 ABRP16_RS01120 WP_349998560.1 254121..255380(+) (pilC) [Stenotrophomonas lacuserhaii strain WHRI 8086]
MSASRSAIRKEPVVRNTMELTPFVWEGTDKRGVKMKGEQLAKNANLLKADLRRQGITPKVVKPKSKPLFGQAGKPVSPKD
IAFFSRQMATMMKSGVPIVSALEIIGGGHKNPRMKKMVDTIRADIEGGSSLHEAISRHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVVAVALIVSAILLIFVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVAWWWL
ILIIVAGAAVGFVMAYKRSPRMQHGMDRFILKVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQINIFPHMVVQMTAIGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGVVV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1039614 ABRP16_RS01120 WP_349998560.1 254121..255380(+) (pilC) [Stenotrophomonas lacuserhaii strain WHRI 8086]
ATGTCAGCAAGTCGCAGTGCGATTAGAAAAGAGCCCGTAGTGCGCAACACTATGGAGCTGACGCCGTTTGTCTGGGAGGG
GACCGACAAGCGTGGCGTCAAGATGAAGGGCGAGCAGCTGGCTAAGAATGCCAACCTGCTCAAGGCAGACCTGCGACGCC
AGGGCATCACACCCAAGGTAGTAAAGCCGAAAAGCAAGCCGCTGTTCGGTCAGGCTGGCAAACCAGTGTCTCCCAAGGAC
ATCGCCTTCTTCAGTCGCCAGATGGCGACGATGATGAAGTCCGGCGTTCCCATCGTGTCTGCATTGGAGATCATCGGCGG
CGGACACAAGAACCCCCGCATGAAAAAGATGGTCGACACCATCCGAGCCGATATCGAAGGCGGCTCGTCGTTGCATGAGG
CGATCAGTCGCCACCCCGTGCAGTTCGATGAGCTCTACCGGAACTTGGTGCGTGCGGGTGAAGGGGCCGGCGTACTGGAA
ACCGTTCTGGATACGGTCGCAAATTACAAGGAAAACATTGAGGCGCTGAAGGGCAAGATCAAGAAGGCGCTTTTCTACCC
AGCCATGGTCGTGGCGGTTGCGTTGATCGTCTCGGCGATTCTCTTGATCTTCGTCGTGCCGCAGTTTGAGGACGTCTTTA
AAGGGTTCGGTGCGGAGCTCCCTGCATTCACCCAGATGATCGTGAATCTTTCTCGATTCATGGTCGCCTGGTGGTGGCTG
ATCCTCATCATCGTCGCTGGCGCTGCCGTCGGCTTTGTCATGGCCTATAAACGATCGCCGCGGATGCAGCACGGCATGGA
TCGTTTCATCCTGAAAGTACCGGTGATCGGCCAGATCATGCACAACAGCTCGATCGCCCGCTTCGCCCGCACCACGGCGG
TGACCTTCAAGGCCGGTGTGCCATTGGTGGAAGCACTGGGGATCGTCGCCGGCGCCACCGGCAACAAGGTCTACGAAGAG
GCCGTGCTGCGCATGCGTGATGACGTGTCGGTCGGTTACCCGGTCAACATGGCGATGAAGCAGATCAACATCTTCCCGCA
CATGGTGGTGCAGATGACGGCCATCGGCGAAGAGGCCGGCGCGTTGGACACGATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAACGCCGTCGACGCGCTGAGCAGCCTGCTGGAACCGATGATCATGGTCTTCATTGGCGTGGTCGTT
GGCGGTATGGTGATCGGTATGTACCTGCCCATCTTCAAACTCGGCGCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.556

94.511

0.525
  pilC Legionella pneumophila strain ERS1305867

52.84

96.659

0.511
  pilC Acinetobacter baylyi ADP1

50.123

96.659

0.484
  pilC Acinetobacter baumannii D1279779

49.754

96.897

0.482
  pilG Neisseria gonorrhoeae MS11

43.216

94.988

0.411
  pilC Vibrio cholerae strain A1552

42.327

96.42

0.408
  pilG Neisseria meningitidis 44/76-A

42.607

95.227

0.406
  pilC Vibrio campbellii strain DS40M4

41.791

95.943

0.401

Multiple sequence alignment