Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ABQ179_RS07430 Genome accession   NZ_CP167817
Coordinates   1747583..1748620 (+) Length   345 a.a.
NCBI ID   WP_104614550.1    Uniprot ID   A0A2S7C9F8
Organism   Xanthomonas dyei strain WHRI 5755     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1742583..1753620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ179_RS07400 (ABQ179_007400) - 1742981..1743367 (-) 387 WP_372365839.1 hypothetical protein -
  ABQ179_RS07405 (ABQ179_007405) - 1743579..1743881 (-) 303 WP_170068505.1 DUF3861 family protein -
  ABQ179_RS07410 (ABQ179_007410) - 1743973..1744581 (-) 609 WP_372469513.1 M23 family metallopeptidase -
  ABQ179_RS07415 (ABQ179_007415) - 1744705..1745127 (-) 423 WP_104614547.1 HU family DNA-binding protein -
  ABQ179_RS07420 (ABQ179_007420) proC 1745655..1746509 (-) 855 WP_349811434.1 pyrroline-5-carboxylate reductase -
  ABQ179_RS07425 (ABQ179_007425) - 1746564..1747256 (-) 693 WP_104614549.1 YggS family pyridoxal phosphate-dependent enzyme -
  ABQ179_RS07430 (ABQ179_007430) pilT 1747583..1748620 (+) 1038 WP_104614550.1 type IV pilus twitching motility protein PilT Machinery gene
  ABQ179_RS07435 (ABQ179_007435) pilU 1748748..1749878 (+) 1131 WP_104614551.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ABQ179_RS07440 (ABQ179_007440) - 1750150..1750824 (+) 675 WP_228323207.1 YitT family protein -
  ABQ179_RS07445 (ABQ179_007445) - 1751260..1752396 (-) 1137 WP_372469514.1 hypothetical protein -
  ABQ179_RS07450 (ABQ179_007450) - 1752486..1753025 (-) 540 WP_349811436.1 DNA-3-methyladenine glycosylase I -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38615.24 Da        Isoelectric Point: 6.6650

>NTDB_id=1039551 ABQ179_RS07430 WP_104614550.1 1747583..1748620(+) (pilT) [Xanthomonas dyei strain WHRI 5755]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGCPPIFRQLIDQPQGLILVTGPTGSGKSTTLAGMIDYINKNEYGHILTVED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSSIQTGQQYGMQTLDQHL
QDLVKRSLITRNQARDYAKDKRVFE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1039551 ABQ179_RS07430 WP_104614550.1 1747583..1748620(+) (pilT) [Xanthomonas dyei strain WHRI 5755]
ATGGATATCGCTGAACTATTGGCGTTTTCTGTCAAGAACAAGGCATCGGACCTGCACCTGTCTGCAGGACTGCCGCCGAT
GATCCGTGTCGATGGCGATGTCCGTCGCATCAATATTCCGGCGTTGGACCATAAGCAGGTGCACGCGCTGGTGTACGACA
TCATGTCGGACAAGCAGCGGCGCGATTACGAAGAATTCCTCGAGGTCGACTTCTCGTTCGAGATTCCCTCGCTGGCGCGC
TTCCGCGTCAACGCATTCAACCAGAACCGTGGCGCCGGTGCGGTGTTCCGCACCATTCCCTCCGAAGTGCTGACGCTGGA
AGACCTGGGCTGCCCGCCGATCTTCCGCCAGCTGATCGACCAGCCGCAGGGTCTGATCCTGGTCACCGGCCCGACCGGTT
CGGGCAAGTCGACCACGCTGGCCGGCATGATCGACTACATCAACAAGAACGAATACGGCCACATTCTCACCGTCGAGGAT
CCGATCGAATTCGTGCACACCTCGCAGAAGTGCCTGATCAATCAGCGCGAAGTGCACCGCGATACGCACGGTTTCAACGA
AGCGCTGCGCTCGGCCTTGCGCGAAGACCCGGACATCATCCTGGTCGGCGAGTTGCGCGACCTGGAAACCATCCGCCTGG
CGCTCACCGCCGCAGAAACCGGCCACCTGGTGTTCGGCACCCTGCACACCAGCTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCGGCTGGCGAAAAGCCCATGGTGCGCTCGATGCTGTCCGAATCCCTGCGCGCGGTGATTTCGCAGGC
ATTGCTCAAGAAAGTGGGCGGCGGGCGCACCGCGGCCTGGGAAATCATGGTCGGCACCCCGGCGATCCGTAACCTGATCC
GCGAAGACAAGGTGGCGCAGATGTATTCGTCGATCCAGACCGGCCAGCAGTACGGCATGCAGACGCTGGATCAGCATCTG
CAGGACCTGGTCAAGCGCAGCCTGATCACGCGCAATCAGGCCCGCGATTACGCCAAGGACAAGCGGGTATTTGAGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S7C9F8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baumannii D1279779

79.942

99.71

0.797
  pilT Acinetobacter baumannii strain A118

79.942

99.71

0.797
  pilT Acinetobacter nosocomialis M2

79.942

99.71

0.797
  pilT Pseudomonas stutzeri DSM 10701

79.07

99.71

0.788
  pilT Acinetobacter baylyi ADP1

78.779

99.71

0.786
  pilT Pseudomonas aeruginosa PAK

78.761

98.261

0.774
  pilT Legionella pneumophila strain Lp02

75

99.71

0.748
  pilT Legionella pneumophila strain ERS1305867

75

99.71

0.748
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.125

95.362

0.678
  pilT Vibrio cholerae strain A1552

71.125

95.362

0.678
  pilT Neisseria meningitidis 8013

65.982

98.841

0.652
  pilT Neisseria gonorrhoeae MS11

65.689

98.841

0.649
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.565

100

0.496
  pilU Pseudomonas stutzeri DSM 10701

40.23

100

0.406
  pilU Vibrio cholerae strain A1552

40.23

100

0.406
  pilU Acinetobacter baylyi ADP1

40.294

98.551

0.397

Multiple sequence alignment