Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ACCQ28_RS16110 Genome accession   NZ_CP167233
Coordinates   3705321..3705761 (-) Length   146 a.a.
NCBI ID   WP_078590287.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. tamarindi strain NCPPB 584     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3700321..3710761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ28_RS16095 (ACCQ28_16095) pilR 3701333..3702787 (+) 1455 WP_011348337.1 sigma-54 dependent transcriptional regulator Regulator
  ACCQ28_RS16100 (ACCQ28_16100) pilB 3703009..3704745 (-) 1737 WP_022558667.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCQ28_RS16105 (ACCQ28_16105) - 3704809..3705243 (-) 435 WP_078590286.1 pilin -
  ACCQ28_RS16110 (ACCQ28_16110) pilE 3705321..3705761 (-) 441 WP_078590287.1 pilin Machinery gene
  ACCQ28_RS16115 (ACCQ28_16115) pilC 3706088..3707344 (+) 1257 WP_057685777.1 type II secretion system F family protein Machinery gene
  ACCQ28_RS16120 (ACCQ28_16120) - 3707351..3708214 (+) 864 WP_008576868.1 A24 family peptidase -
  ACCQ28_RS16125 (ACCQ28_16125) coaE 3708228..3708833 (+) 606 WP_372183618.1 dephospho-CoA kinase -
  ACCQ28_RS16130 (ACCQ28_16130) - 3708903..3710237 (-) 1335 WP_057681809.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 14944.04 Da        Isoelectric Point: 9.0090

>NTDB_id=1039059 ACCQ28_RS16110 WP_078590287.1 3705321..3705761(-) (pilE) [Xanthomonas axonopodis pv. tamarindi strain NCPPB 584]
MKKQNGFTLIELMIVVAIIAILAAIALPAYQDYLARSQVSEGLSLASGAKTAVAETYANTGAFPANNAAAGLEAAANIKG
KYITSVTVSSGGVITALFNNSNAKLSGKNLVLTPTDNNGSISWGCSNGTTIDQKYLPTSCRTAATP

Nucleotide


Download         Length: 441 bp        

>NTDB_id=1039059 ACCQ28_RS16110 WP_078590287.1 3705321..3705761(-) (pilE) [Xanthomonas axonopodis pv. tamarindi strain NCPPB 584]
ATGAAGAAGCAAAACGGTTTTACTTTGATCGAACTCATGATCGTGGTCGCGATCATTGCGATCCTGGCTGCCATTGCTCT
GCCGGCTTATCAGGACTACCTCGCGCGTTCGCAGGTCTCTGAAGGTCTGTCGCTGGCGTCGGGTGCAAAGACCGCCGTTG
CTGAGACCTATGCCAATACTGGTGCATTCCCGGCCAACAACGCAGCTGCTGGTCTTGAGGCTGCTGCAAACATCAAAGGT
AAGTACATCACCTCGGTGACCGTTAGCTCTGGCGGCGTCATCACTGCGCTGTTTAATAACTCCAATGCAAAGCTGAGTGG
TAAGAACCTTGTCCTGACTCCGACGGACAACAACGGCTCGATCAGCTGGGGTTGCAGCAATGGCACCACCATCGATCAGA
AGTATCTGCCTACCTCTTGCCGTACTGCGGCTACCCCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

47.799

100

0.521
  pilE Neisseria gonorrhoeae strain FA1090

47.097

100

0.5
  pilA2 Legionella pneumophila str. Paris

50

95.89

0.479
  pilA/pilA1 Eikenella corrodens VA1

45.161

100

0.479
  pilA2 Legionella pneumophila strain ERS1305867

49.286

95.89

0.473
  comP Acinetobacter baylyi ADP1

46

100

0.473
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

36.413

100

0.459
  pilA Acinetobacter baumannii strain A118

42.953

100

0.438
  pilA Ralstonia pseudosolanacearum GMI1000

37.805

100

0.425
  pilA Pseudomonas aeruginosa PAK

39.474

100

0.411
  pilA Vibrio cholerae strain A1552

38.816

100

0.404
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

38.816

100

0.404
  pilA Vibrio cholerae C6706

38.816

100

0.404
  pilA Vibrio campbellii strain DS40M4

38.255

100

0.39
  pilA/pilAI Pseudomonas stutzeri DSM 10701

38.849

95.205

0.37

Multiple sequence alignment