Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACCQ28_RS16115 Genome accession   NZ_CP167233
Coordinates   3706088..3707344 (+) Length   418 a.a.
NCBI ID   WP_057685777.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. tamarindi strain NCPPB 584     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3701088..3712344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ28_RS16095 (ACCQ28_16095) pilR 3701333..3702787 (+) 1455 WP_011348337.1 sigma-54 dependent transcriptional regulator Regulator
  ACCQ28_RS16100 (ACCQ28_16100) pilB 3703009..3704745 (-) 1737 WP_022558667.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCQ28_RS16105 (ACCQ28_16105) - 3704809..3705243 (-) 435 WP_078590286.1 pilin -
  ACCQ28_RS16110 (ACCQ28_16110) pilE 3705321..3705761 (-) 441 WP_078590287.1 pilin Machinery gene
  ACCQ28_RS16115 (ACCQ28_16115) pilC 3706088..3707344 (+) 1257 WP_057685777.1 type II secretion system F family protein Machinery gene
  ACCQ28_RS16120 (ACCQ28_16120) - 3707351..3708214 (+) 864 WP_008576868.1 A24 family peptidase -
  ACCQ28_RS16125 (ACCQ28_16125) coaE 3708228..3708833 (+) 606 WP_372183618.1 dephospho-CoA kinase -
  ACCQ28_RS16130 (ACCQ28_16130) - 3708903..3710237 (-) 1335 WP_057681809.1 HAMP domain-containing sensor histidine kinase -
  ACCQ28_RS16135 (ACCQ28_16135) - 3710230..3710907 (-) 678 WP_003490678.1 response regulator transcription factor -
  ACCQ28_RS16140 (ACCQ28_16140) - 3710933..3711409 (-) 477 WP_007962331.1 hypothetical protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45925.32 Da        Isoelectric Point: 10.3003

>NTDB_id=1039060 ACCQ28_RS16115 WP_057685777.1 3706088..3707344(+) (pilC) [Xanthomonas axonopodis pv. tamarindi strain NCPPB 584]
MSVARSSIKKQPVDRNVSEMIPFVWEGTDKRGVKMKGEQQARNANMLRAELRRQGITPTVVKTKPKPLFGAAGKKISPKD
IAFFSRQMATMMKSGVPIVGALEIIGEGHKNPRMKKMVGQIRADIEGGSSLYEAISRHPVQFDDLYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVMAVAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWF
MLLASVAAIAGFIFAYKRSPRMRHGMDRLVLKFPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGSVV

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1039060 ACCQ28_RS16115 WP_057685777.1 3706088..3707344(+) (pilC) [Xanthomonas axonopodis pv. tamarindi strain NCPPB 584]
ATGTCAGTCGCTCGCAGCAGCATCAAGAAGCAACCGGTAGACCGAAACGTCAGTGAAATGATCCCGTTTGTCTGGGAAGG
CACAGACAAGCGTGGCGTCAAGATGAAAGGGGAGCAGCAGGCCCGCAATGCAAACATGCTGCGCGCAGAGCTTCGTCGTC
AGGGAATCACGCCCACAGTTGTAAAGACTAAACCAAAACCACTTTTCGGCGCTGCGGGCAAAAAAATTTCGCCAAAGGAC
ATCGCATTCTTCAGCCGTCAGATGGCAACGATGATGAAGTCCGGAGTCCCCATCGTTGGCGCACTTGAGATTATCGGTGA
GGGGCACAAAAACCCTCGCATGAAAAAGATGGTTGGTCAGATTCGAGCCGATATCGAAGGAGGCTCTTCACTTTACGAAG
CTATTTCTCGACATCCAGTCCAGTTTGACGACTTGTATCGAAACCTGGTTCGCGCGGGCGAAGGCGCTGGCGTATTGGAA
ACTGTTCTAGATACAGTTGCGAACTATAAAGAAAATATCGAAGCCCTTAAAGGCAAAATCAAAAAAGCCCTGTTTTATCC
CGCCATGGTAATGGCCGTCGCAATTATTGTCAGCGGCATCCTCCTAGTTTTCGTGGTCCCTCAATTTGAAGATGTATTCA
AGGGATTTGGAGCAGAGCTTCCCGCTTTTACGCAAATGATTGTAGCAGCATCTCGTTTCATGGTGTCTTATTGGTGGTTC
ATGCTACTAGCGAGTGTCGCAGCGATAGCCGGTTTCATCTTTGCCTACAAACGCTCGCCGCGCATGCGCCATGGAATGGA
CAGGCTTGTCTTGAAGTTTCCAGTGATCGGGCAGATTATGCACAACAGCTCCATTGCTCGATTTGCCCGAACCACGGCGG
TCACATTTAAAGCTGGCGTACCCCTTGTAGAAGCCCTAAGCATTGTTGCCGGCGCGACTGGCAACAAGGTCTATGAGGAA
GCTGTACTGCGGATGCGCGACGACGTCTCTGTGGGATACCCCGTGAACATGGCTATGAAGCAAGTAAACCTGTTTCCTCA
TATGGTGGTTCAAATGACATCCATTGGCGAGGAAGCGGGCGCTCTTGATGCCATGCTATTTAAAGTAGCCGAGTATTTTG
AGCAGGAAGTGAATAACGCCGTGGACGCGCTGAGCAGCCTGTTGGAGCCGTTGATCATGGTATTCATCGGTACAATTGTT
GGCGGTATGGTGATCGGCATGTATCTCCCAATTTTCAAACTTGGCTCGGTGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

52.854

96.411

0.51
  pilC Pseudomonas stutzeri DSM 10701

53.535

94.737

0.507
  pilC Acinetobacter baumannii D1279779

51.861

96.411

0.5
  pilC Legionella pneumophila strain ERS1305867

51.232

97.129

0.498
  pilG Neisseria gonorrhoeae MS11

45.5

95.694

0.435
  pilG Neisseria meningitidis 44/76-A

45

95.694

0.431
  pilC Vibrio cholerae strain A1552

42.677

94.737

0.404
  pilC Vibrio campbellii strain DS40M4

39.646

94.737

0.376
  pilC Thermus thermophilus HB27

37.94

95.215

0.361

Multiple sequence alignment