Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | AB8808_RS16345 | Genome accession | NZ_CP166101 |
| Coordinates | 3857350..3858387 (+) | Length | 345 a.a. |
| NCBI ID | WP_036136938.1 | Uniprot ID | - |
| Organism | Xanthomonas sp. NCPPB 2632 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3852350..3863387
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB8808_RS16330 (AB8808_16320) | - | 3853650..3855755 (+) | 2106 | WP_369927316.1 | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | - |
| AB8808_RS16335 (AB8808_16325) | - | 3855828..3856412 (-) | 585 | WP_369927317.1 | YggT family protein | - |
| AB8808_RS16340 (AB8808_16330) | proC | 3856409..3857233 (-) | 825 | WP_285404035.1 | pyrroline-5-carboxylate reductase | - |
| AB8808_RS16345 (AB8808_16335) | pilT | 3857350..3858387 (+) | 1038 | WP_036136938.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| AB8808_RS16350 (AB8808_16340) | pilU | 3858462..3859625 (+) | 1164 | WP_369927318.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| AB8808_RS16355 (AB8808_16345) | - | 3859737..3860111 (-) | 375 | WP_369927319.1 | BON domain-containing protein | - |
| AB8808_RS16360 (AB8808_16350) | - | 3860342..3862090 (-) | 1749 | WP_369927321.1 | hypothetical protein | - |
| AB8808_RS16365 (AB8808_16355) | - | 3862160..3863086 (-) | 927 | WP_369927323.1 | aspartate carbamoyltransferase catalytic subunit | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 38564.30 Da Isoelectric Point: 6.7837
>NTDB_id=1033424 AB8808_RS16345 WP_036136938.1 3857350..3858387(+) (pilT) [Xanthomonas sp. NCPPB 2632]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALEHKQVHSLIYDIMSDKQRRDYEEFLETDFSFEIPGLAR
FRVNAFNHNRGAGAVFRTIPSEVLTLEDLGAPKIFRELIEQPQGLILVTGPTGSGKSTTLAAMVDHINKNEYGHLLTVED
PIEFVHTSQKCLVNQREVHRDTHGFNEALRSALREDPDYILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQSLLKKVGGGRVAVHEIMVGIPAIRNLIREDKVAQMYSAIQTGQQYGMQTLDQNL
LDLVKRGLITRQEGMMYAKNKESFR
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALEHKQVHSLIYDIMSDKQRRDYEEFLETDFSFEIPGLAR
FRVNAFNHNRGAGAVFRTIPSEVLTLEDLGAPKIFRELIEQPQGLILVTGPTGSGKSTTLAAMVDHINKNEYGHLLTVED
PIEFVHTSQKCLVNQREVHRDTHGFNEALRSALREDPDYILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQSLLKKVGGGRVAVHEIMVGIPAIRNLIREDKVAQMYSAIQTGQQYGMQTLDQNL
LDLVKRGLITRQEGMMYAKNKESFR
Nucleotide
Download Length: 1038 bp
>NTDB_id=1033424 AB8808_RS16345 WP_036136938.1 3857350..3858387(+) (pilT) [Xanthomonas sp. NCPPB 2632]
ATGGATATCGCCGAACTCCTTGCCTTCTCCGTGAAGAACAAGGCCTCCGACCTGCACCTCTCCGCGGGCCTGCCGCCCAT
GATCCGCGTCGACGGTGACGTGCGGCGTATCAACATCCCCGCGCTGGAACACAAGCAGGTGCACTCGCTGATCTACGACA
TCATGTCGGACAAGCAGCGGCGCGACTACGAGGAGTTCCTGGAGACCGACTTCTCCTTCGAGATCCCCGGCCTGGCGCGT
TTCCGCGTCAACGCCTTCAACCACAACCGTGGCGCCGGCGCGGTGTTCCGTACCATTCCGTCCGAGGTGCTCACGCTGGA
AGACCTCGGTGCGCCGAAGATCTTCCGCGAGCTGATCGAGCAGCCGCAGGGCCTGATCCTGGTCACCGGCCCGACCGGCT
CGGGCAAGTCCACCACGCTGGCGGCGATGGTCGATCACATCAACAAGAACGAGTACGGCCACCTCCTCACCGTGGAGGAC
CCGATCGAATTCGTGCACACCTCGCAGAAGTGCCTGGTCAACCAGCGCGAGGTGCACCGCGACACCCACGGGTTCAATGA
GGCGCTGCGCTCGGCGTTGCGCGAAGATCCGGACTACATCCTGGTCGGCGAGCTTCGCGACCTGGAAACCATCCGCCTGG
CGCTCACCGCCGCGGAAACGGGCCACCTGGTGTTCGGTACCCTGCACACCTCGTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTCTTCCCGGCGGGTGAGAAACCGATGGTCCGCTCGATGCTCTCCGAGTCGTTGCGCGCGGTGATCTCGCAGTC
GCTGTTGAAGAAAGTGGGCGGAGGGCGCGTGGCGGTCCACGAGATCATGGTAGGCATCCCGGCCATCCGTAACCTGATCC
GCGAGGACAAGGTCGCCCAGATGTACTCGGCGATCCAGACCGGCCAGCAGTACGGCATGCAGACCCTGGACCAGAACCTG
CTGGACCTGGTAAAGCGCGGCCTGATCACCCGCCAGGAAGGCATGATGTACGCCAAGAACAAGGAAAGCTTCCGCTAA
ATGGATATCGCCGAACTCCTTGCCTTCTCCGTGAAGAACAAGGCCTCCGACCTGCACCTCTCCGCGGGCCTGCCGCCCAT
GATCCGCGTCGACGGTGACGTGCGGCGTATCAACATCCCCGCGCTGGAACACAAGCAGGTGCACTCGCTGATCTACGACA
TCATGTCGGACAAGCAGCGGCGCGACTACGAGGAGTTCCTGGAGACCGACTTCTCCTTCGAGATCCCCGGCCTGGCGCGT
TTCCGCGTCAACGCCTTCAACCACAACCGTGGCGCCGGCGCGGTGTTCCGTACCATTCCGTCCGAGGTGCTCACGCTGGA
AGACCTCGGTGCGCCGAAGATCTTCCGCGAGCTGATCGAGCAGCCGCAGGGCCTGATCCTGGTCACCGGCCCGACCGGCT
CGGGCAAGTCCACCACGCTGGCGGCGATGGTCGATCACATCAACAAGAACGAGTACGGCCACCTCCTCACCGTGGAGGAC
CCGATCGAATTCGTGCACACCTCGCAGAAGTGCCTGGTCAACCAGCGCGAGGTGCACCGCGACACCCACGGGTTCAATGA
GGCGCTGCGCTCGGCGTTGCGCGAAGATCCGGACTACATCCTGGTCGGCGAGCTTCGCGACCTGGAAACCATCCGCCTGG
CGCTCACCGCCGCGGAAACGGGCCACCTGGTGTTCGGTACCCTGCACACCTCGTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTCTTCCCGGCGGGTGAGAAACCGATGGTCCGCTCGATGCTCTCCGAGTCGTTGCGCGCGGTGATCTCGCAGTC
GCTGTTGAAGAAAGTGGGCGGAGGGCGCGTGGCGGTCCACGAGATCATGGTAGGCATCCCGGCCATCCGTAACCTGATCC
GCGAGGACAAGGTCGCCCAGATGTACTCGGCGATCCAGACCGGCCAGCAGTACGGCATGCAGACCCTGGACCAGAACCTG
CTGGACCTGGTAAAGCGCGGCCTGATCACCCGCCAGGAAGGCATGATGTACGCCAAGAACAAGGAAAGCTTCCGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Acinetobacter baumannii D1279779 |
80.233 |
99.71 |
0.8 |
| pilT | Acinetobacter baumannii strain A118 |
80.233 |
99.71 |
0.8 |
| pilT | Acinetobacter nosocomialis M2 |
80.233 |
99.71 |
0.8 |
| pilT | Acinetobacter baylyi ADP1 |
78.488 |
99.71 |
0.783 |
| pilT | Pseudomonas stutzeri DSM 10701 |
78.488 |
99.71 |
0.783 |
| pilT | Pseudomonas aeruginosa PAK |
78.198 |
99.71 |
0.78 |
| pilT | Legionella pneumophila strain Lp02 |
74.419 |
99.71 |
0.742 |
| pilT | Legionella pneumophila strain ERS1305867 |
74.419 |
99.71 |
0.742 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
71.471 |
96.522 |
0.69 |
| pilT | Vibrio cholerae strain A1552 |
71.471 |
96.522 |
0.69 |
| pilT | Neisseria meningitidis 8013 |
65.217 |
100 |
0.652 |
| pilT | Neisseria gonorrhoeae MS11 |
64.928 |
100 |
0.649 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
48.696 |
100 |
0.487 |
| pilU | Pseudomonas stutzeri DSM 10701 |
39.595 |
100 |
0.397 |
| pilU | Vibrio cholerae strain A1552 |
39.595 |
100 |
0.397 |
| pilU | Acinetobacter baylyi ADP1 |
38.04 |
100 |
0.383 |