Detailed information NTG1033425

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: AB8808_RS16350
• Genome accession: NZ_CP166101
• Coordinates: 3858462..3859625 (+)
• Length: 387 a.a.
• NCBI ID: WP_369927318.1
• Uniprot ID: -
• Organism: Xanthomonas sp. NCPPB 2632
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3853462..3864625

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB8808_RS16330 (AB8808_16320)	-	3853650..3855755 (+)	2106	WP_369927316.1	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	-
AB8808_RS16335 (AB8808_16325)	-	3855828..3856412 (-)	585	WP_369927317.1	YggT family protein	-
AB8808_RS16340 (AB8808_16330)	proC	3856409..3857233 (-)	825	WP_285404035.1	pyrroline-5-carboxylate reductase	-
AB8808_RS16345 (AB8808_16335)	pilT	3857350..3858387 (+)	1038	WP_036136938.1	type IV pilus twitching motility protein PilT	Machinery gene
AB8808_RS16350 (AB8808_16340)	pilU	3858462..3859625 (+)	1164	WP_369927318.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
AB8808_RS16355 (AB8808_16345)	-	3859737..3860111 (-)	375	WP_369927319.1	BON domain-containing protein	-
AB8808_RS16360 (AB8808_16350)	-	3860342..3862090 (-)	1749	WP_369927321.1	hypothetical protein	-
AB8808_RS16365 (AB8808_16355)	-	3862160..3863086 (-)	927	WP_369927323.1	aspartate carbamoyltransferase catalytic subunit	-
AB8808_RS16370 (AB8808_16360)	ruvX	3863132..3863551 (-)	420	WP_369927325.1	Holliday junction resolvase RuvX	-
AB8808_RS16375 (AB8808_16365)	-	3863565..3864131 (-)	567	WP_369927327.1	YqgE/AlgH family protein	-
AB8808_RS16380 (AB8808_16370)	-	3864259..3864546 (+)	288	WP_369927329.1	hypothetical protein	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 43217.47 Da
• Isoelectric Point: 6.8594

>NTDB_id=1033425 AB8808_RS16350 WP_369927318.1 3858462..3859625(+) (pilU) [Xanthomonas sp. NCPPB 2632]
MSDFDFTSFLKLMVHKQASDLFITAGVAPSMKVQGRIVPITQSPLSAQQARDMVLNVMTPAQREEFEKTHECQFAISASG
VGRFRVSCFYQRNCVGMVLRRIESKIPTPEELNLPPIIKQLAMTKRGIIIFVGGTGTGKSTSMASMIGYRNQNSTGHIIT
IEDPIEYVHKHEGCIITQRELGIDTDSWENALKNTLRQAPDVIMIGEVRTRETMEHAINFSETGHLCLCTLHANNANQAL
DRILHFFPEDRRSALFMDLSLNLKGIVAQQLIPTPDGKARRVAVEVLLGTPLAQDYIRQGEVHKLKELMRDSNQLGMRTF
DQSLVELYHAGEISYEDALRHADSSNEVRLRIKLAQGGDAHTLSQGLEGVEIDTSHDKQTFGGMLSR

Nucleotide

• Length: 1164 bp

>NTDB_id=1033425 AB8808_RS16350 WP_369927318.1 3858462..3859625(+) (pilU) [Xanthomonas sp. NCPPB 2632]
ATGAGCGACTTCGATTTCACCTCCTTCCTCAAGCTGATGGTGCACAAGCAGGCCTCCGACCTGTTCATCACCGCCGGCGT
CGCGCCCTCCATGAAAGTGCAGGGCCGCATCGTTCCCATCACGCAGAGCCCGCTTTCCGCGCAGCAGGCGCGCGACATGG
TGCTCAACGTGATGACGCCCGCGCAGCGCGAGGAATTCGAAAAGACCCACGAGTGCCAGTTCGCCATCAGCGCATCGGGC
GTGGGCCGGTTCCGCGTATCGTGTTTCTACCAGCGCAACTGCGTCGGCATGGTGCTGCGCCGGATCGAGTCGAAGATTCC
CACGCCGGAAGAACTGAACCTGCCGCCGATCATCAAGCAGCTGGCGATGACCAAGCGCGGCATCATCATCTTCGTGGGCG
GTACCGGTACGGGTAAGTCGACCTCGATGGCCTCGATGATCGGCTACCGCAACCAGAATTCCACGGGCCACATCATCACG
ATCGAGGACCCGATCGAATACGTGCACAAGCACGAAGGCTGCATCATCACCCAGCGCGAACTCGGCATCGATACCGACAG
CTGGGAGAACGCGCTGAAGAACACGCTGCGCCAGGCGCCCGACGTGATCATGATCGGCGAGGTGCGTACCCGCGAGACGA
TGGAGCATGCCATCAACTTCTCGGAAACCGGCCACCTGTGCCTGTGCACCCTGCACGCCAACAACGCCAACCAGGCACTG
GACCGCATCCTCCATTTCTTCCCGGAAGATCGTCGCAGCGCGTTGTTCATGGACCTGTCGCTGAACCTCAAGGGCATCGT
GGCGCAGCAGCTCATTCCCACGCCCGACGGCAAGGCGCGTCGCGTCGCGGTGGAAGTGCTGCTGGGCACGCCGCTTGCGC
AGGACTACATCCGCCAGGGCGAAGTGCACAAGCTGAAGGAACTGATGCGGGACTCCAACCAGCTGGGCATGCGCACGTTC
GACCAGAGCCTGGTGGAGCTCTACCACGCCGGCGAAATCTCTTACGAGGACGCACTGCGCCACGCCGACAGCTCGAACGA
AGTGCGCCTACGGATCAAGCTTGCCCAGGGCGGCGACGCGCATACCCTGTCGCAGGGCCTGGAAGGCGTCGAGATCGACA
CCTCCCACGACAAACAGACCTTCGGCGGCATGCTCAGCCGCTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (117-272)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	66.043	96.641	0.638
pilU	Acinetobacter baylyi ADP1	62.921	91.99	0.579
pilU	Vibrio cholerae strain A1552	51.622	95.607	0.494