Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   AB8814_RS07665 Genome accession   NZ_CP166090
Coordinates   1852644..1853681 (+) Length   345 a.a.
NCBI ID   WP_003489919.1    Uniprot ID   -
Organism   Xanthomonas hydrangeae strain NCPPB 4692     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1847644..1858681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8814_RS07635 (AB8814_07635) - 1848015..1848635 (-) 621 WP_205394203.1 M23 family metallopeptidase -
  AB8814_RS07640 (AB8814_07640) - 1848771..1849196 (-) 426 WP_115040574.1 HU family DNA-binding protein -
  AB8814_RS07645 (AB8814_07645) proC 1849634..1850488 (-) 855 WP_205394204.1 pyrroline-5-carboxylate reductase -
  AB8814_RS07650 (AB8814_07650) - 1850536..1851228 (-) 693 WP_205394205.1 YggS family pyridoxal phosphate-dependent enzyme -
  AB8814_RS07655 (AB8814_07655) - 1851385..1851594 (-) 210 WP_210765971.1 NPP1 family protein -
  AB8814_RS07660 (AB8814_07660) - 1851513..1852103 (-) 591 WP_205394206.1 NPP1 family protein -
  AB8814_RS07665 (AB8814_07665) pilT 1852644..1853681 (+) 1038 WP_003489919.1 type IV pilus twitching motility protein PilT Machinery gene
  AB8814_RS07670 (AB8814_07670) pilU 1853804..1854934 (+) 1131 WP_006448884.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  AB8814_RS07675 (AB8814_07675) - 1855236..1855910 (+) 675 WP_205394800.1 YitT family protein -
  AB8814_RS07680 (AB8814_07680) - 1856051..1856596 (-) 546 WP_205394207.1 DNA-3-methyladenine glycosylase I -
  AB8814_RS07685 (AB8814_07685) - 1856921..1857487 (+) 567 WP_006448880.1 YqgE/AlgH family protein -
  AB8814_RS07690 (AB8814_07690) ruvX 1857480..1857947 (+) 468 WP_205394208.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38643.30 Da        Isoelectric Point: 6.6652

>NTDB_id=1033319 AB8814_RS07665 WP_003489919.1 1852644..1853681(+) (pilT) [Xanthomonas hydrangeae strain NCPPB 4692]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGCPPIFRQLIDQPQGLILVTGPTGSGKSTTLAGMIDYINKNEYGHILTVED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSSIQTGQQYGMQTLDQHL
QDLVKRSLITRNQAREYAKDKRIFE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1033319 AB8814_RS07665 WP_003489919.1 1852644..1853681(+) (pilT) [Xanthomonas hydrangeae strain NCPPB 4692]
ATGGATATCGCTGAACTATTGGCGTTTTCTGTCAAAAACAAGGCATCGGACCTGCATCTGTCGGCCGGCTTGCCGCCGAT
GATCCGTGTCGATGGCGATGTCCGTCGCATCAATATTCCGGCCCTGGACCACAAGCAGGTGCACGCGCTGGTGTACGACA
TCATGTCGGACAAGCAGCGCCGCGATTACGAGGAATTCCTCGAGGTCGACTTCTCGTTCGAAATTCCGTCGCTGGCGCGC
TTCCGCGTCAACGCGTTCAACCAGAACCGCGGTGCCGGTGCGGTGTTCCGTACCATTCCTTCCGAAGTGCTGACGCTGGA
AGACCTGGGCTGCCCGCCGATCTTCCGCCAGCTGATCGACCAGCCGCAGGGCCTGATCCTGGTCACCGGCCCGACCGGTT
CGGGCAAGTCGACCACGCTCGCCGGCATGATCGACTACATCAACAAGAACGAATACGGCCACATTCTCACGGTCGAGGAT
CCGATCGAGTTCGTGCATACCTCGCAGAAGTGCCTGATCAATCAGCGCGAAGTGCATCGCGACACGCACGGCTTCAACGA
GGCGCTGCGCTCGGCCTTGCGCGAAGACCCGGACATCATCCTGGTCGGCGAGTTGCGCGATCTGGAAACCATCCGCCTGG
CGCTGACCGCTGCGGAAACCGGCCATCTGGTGTTCGGCACCTTGCACACCAGCTCGGCGGCCAAGACCATCGACCGTATC
ATCGACGTGTTTCCGGCCGGCGAAAAGCCGATGGTGCGCTCGATGCTGTCCGAGTCGCTGCGCGCGGTGATTTCGCAGGC
GTTGTTGAAGAAGGTCGGCGGCGGACGTACCGCCGCCTGGGAAATCATGGTCGGCACCCCGGCGATCCGCAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTATTCGTCGATCCAGACCGGCCAGCAATACGGCATGCAGACGCTGGATCAGCATCTG
CAGGACCTGGTCAAGCGCAGCCTGATCACGCGCAACCAGGCGCGCGAGTACGCCAAGGACAAGCGGATATTCGAGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

79.942

99.71

0.797
  pilT Acinetobacter baumannii D1279779

79.942

99.71

0.797
  pilT Acinetobacter baumannii strain A118

79.942

99.71

0.797
  pilT Pseudomonas stutzeri DSM 10701

79.36

99.71

0.791
  pilT Acinetobacter baylyi ADP1

78.779

99.71

0.786
  pilT Pseudomonas aeruginosa PAK

79.056

98.261

0.777
  pilT Legionella pneumophila strain Lp02

75.291

99.71

0.751
  pilT Legionella pneumophila strain ERS1305867

75.291

99.71

0.751
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.125

95.362

0.678
  pilT Vibrio cholerae strain A1552

71.125

95.362

0.678
  pilT Neisseria meningitidis 8013

65.982

98.841

0.652
  pilT Neisseria gonorrhoeae MS11

65.689

98.841

0.649
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.855

100

0.499
  pilU Pseudomonas stutzeri DSM 10701

40.708

98.261

0.4
  pilU Acinetobacter baylyi ADP1

40.294

98.551

0.397
  pilU Vibrio cholerae strain A1552

40.597

97.101

0.394

Multiple sequence alignment