Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   ABZP26_RS14205 Genome accession   NZ_CP162514
Coordinates   3044245..3044679 (+) Length   144 a.a.
NCBI ID   WP_368485085.1    Uniprot ID   A0AB39ANW1
Organism   Pseudoalteromonas sp. SD03     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3039245..3049679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZP26_RS14185 (ABZP26_14185) pdhR 3039522..3040271 (-) 750 WP_008114937.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -
  ABZP26_RS14190 (ABZP26_14190) ampE 3041013..3041864 (-) 852 WP_024601737.1 beta-lactamase regulator AmpE -
  ABZP26_RS14195 (ABZP26_14195) ampD 3042152..3042697 (-) 546 WP_368485084.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ABZP26_RS14200 (ABZP26_14200) nadC 3042889..3043734 (+) 846 WP_290191705.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ABZP26_RS14205 (ABZP26_14205) pilA/pilAI 3044245..3044679 (+) 435 WP_368485085.1 pilin Machinery gene
  ABZP26_RS14210 (ABZP26_14210) pilC 3044793..3046019 (+) 1227 WP_368485086.1 type II secretion system F family protein Machinery gene
  ABZP26_RS14215 (ABZP26_14215) pilD 3046451..3047362 (+) 912 WP_036956689.1 A24 family peptidase Machinery gene
  ABZP26_RS14220 (ABZP26_14220) coaE 3047365..3047994 (+) 630 WP_036956690.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15051.12 Da        Isoelectric Point: 4.9995

>NTDB_id=1026722 ABZP26_RS14205 WP_368485085.1 3044245..3044679(+) (pilA/pilAI) [Pseudoalteromonas sp. SD03]
MQTMTQQNQKGFTLIELMIVVAIIGILAAVALPQYQDYTAKSQVGSAYAEVTSLKTQFEVAVNEGKAPSITSTDAGFIGQ
TANGGTYCTIGITGSTAIECTMKNSNAGKINGKTLTLNRSVDGVWTCAADATLEAKFVPGNCTQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=1026722 ABZP26_RS14205 WP_368485085.1 3044245..3044679(+) (pilA/pilAI) [Pseudoalteromonas sp. SD03]
ATGCAAACAATGACACAACAAAACCAAAAGGGTTTCACCCTAATTGAATTAATGATTGTAGTAGCAATCATCGGGATTTT
AGCAGCAGTAGCACTGCCGCAGTATCAAGACTACACAGCTAAATCACAAGTCGGGTCTGCTTATGCTGAGGTAACATCTT
TAAAAACGCAATTTGAGGTTGCTGTAAATGAAGGTAAAGCCCCATCAATAACATCTACTGATGCTGGGTTTATCGGCCAA
ACAGCTAACGGCGGGACATATTGCACCATTGGCATTACAGGTTCTACTGCAATCGAGTGTACTATGAAGAACAGTAATGC
AGGAAAAATTAATGGCAAAACCCTAACACTCAACAGATCAGTTGACGGTGTTTGGACTTGTGCAGCTGATGCAACTCTTG
AAGCGAAGTTTGTTCCTGGTAATTGTACCCAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)

Pilin (bacterial filament) (Pilin)

(40-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

59.155

98.611

0.583
  pilA Acinetobacter baumannii strain A118

53.237

96.528

0.514
  pilA/pilAII Pseudomonas stutzeri DSM 10701

50.37

93.75

0.472
  pilA Pseudomonas aeruginosa PAK

43.624

100

0.451
  pilA Vibrio cholerae strain A1552

42.282

100

0.438
  pilA Vibrio cholerae C6706

42.282

100

0.438
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

42.282

100

0.438
  pilA/pilA1 Eikenella corrodens VA1

40.645

100

0.437
  pilE Neisseria gonorrhoeae MS11

39.355

100

0.424
  pilA Ralstonia pseudosolanacearum GMI1000

35.088

100

0.417
  comP Acinetobacter baylyi ADP1

39.726

100

0.403
  pilE Neisseria gonorrhoeae strain FA1090

37.662

100

0.403
  pilA2 Legionella pneumophila str. Paris

40.441

94.444

0.382
  pilA2 Legionella pneumophila strain ERS1305867

40.441

94.444

0.382

Multiple sequence alignment