Detailed information NTG1026724

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABZP26_RS14215
• Genome accession: NZ_CP162514
• Coordinates: 3046451..3047362 (+)
• Length: 303 a.a.
• NCBI ID: WP_036956689.1
• Uniprot ID: -
• Organism: Pseudoalteromonas sp. SD03
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3041451..3052362

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABZP26_RS14195 (ABZP26_14195)	ampD	3042152..3042697 (-)	546	WP_368485084.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
ABZP26_RS14200 (ABZP26_14200)	nadC	3042889..3043734 (+)	846	WP_290191705.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ABZP26_RS14205 (ABZP26_14205)	pilA/pilAI	3044245..3044679 (+)	435	WP_368485085.1	pilin	Machinery gene
ABZP26_RS14210 (ABZP26_14210)	pilC	3044793..3046019 (+)	1227	WP_368485086.1	type II secretion system F family protein	Machinery gene
ABZP26_RS14215 (ABZP26_14215)	pilD	3046451..3047362 (+)	912	WP_036956689.1	A24 family peptidase	Machinery gene
ABZP26_RS14220 (ABZP26_14220)	coaE	3047365..3047994 (+)	630	WP_036956690.1	dephospho-CoA kinase	-
ABZP26_RS14225 (ABZP26_14225)	pilB	3048129..3049805 (+)	1677	WP_064664023.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABZP26_RS14230 (ABZP26_14230)	yacG	3049870..3050100 (+)	231	WP_008114915.1	DNA gyrase inhibitor YacG	-
ABZP26_RS14235 (ABZP26_14235)	-	3050160..3050648 (-)	489	WP_368485087.1	Spy/CpxP family protein refolding chaperone	-
ABZP26_RS14240 (ABZP26_14240)	-	3050816..3051505 (+)	690	WP_016899750.1	response regulator transcription factor	-

Sequence

Protein

• Length: 303 a.a.
• Molecular weight: 33437.74 Da
• Isoelectric Point: 7.1792

>NTDB_id=1026724 ABZP26_RS14215 WP_036956689.1 3046451..3047362(+) (pilD) [Pseudoalteromonas sp. SD03]
MQSLFIDITTAMQSHLWFYLTTIGLVSLCIGSFLNVVIYRLPVMMQKEWQTECRLLLADELTSPKAKQTTEHTTDTFNLV
KPNSCCPKCKAAIKPWQNIPIISWLFLKGKCATCDNPISIRYPSVEAITAILSLVVAYTFGATEQALLYIVVTWALVALT
FIDIDHMLLPDQLTLPLLWLALIASVMGHTIAPSDAIIGAACGYLSLWSVFWLFKLITGKEGMGYGDFKLLAVFGALLGW
QSLLTIILLSSVVGAVIGIALLSIQGKDKATPIPFGPYLAIAGWITMLWGTQLQNSYFNFIGY

Nucleotide

• Length: 912 bp

>NTDB_id=1026724 ABZP26_RS14215 WP_036956689.1 3046451..3047362(+) (pilD) [Pseudoalteromonas sp. SD03]
ATGCAAAGTCTTTTTATTGATATCACCACCGCAATGCAAAGCCATTTATGGTTTTACTTAACCACGATTGGCCTAGTGAG
TTTATGTATTGGTAGCTTTTTAAATGTGGTGATATATCGCTTGCCAGTGATGATGCAAAAAGAATGGCAAACTGAATGCC
GCTTATTATTAGCCGATGAACTAACCAGCCCAAAGGCTAAACAGACCACTGAACACACTACTGACACGTTTAACTTAGTT
AAACCCAATTCATGTTGCCCAAAGTGCAAAGCGGCGATTAAGCCATGGCAAAATATTCCCATTATTAGTTGGTTATTTTT
AAAAGGTAAATGCGCAACCTGTGATAACCCAATTTCAATTCGTTATCCAAGCGTTGAGGCTATTACGGCTATTTTAAGTT
TAGTGGTTGCCTACACCTTTGGCGCTACAGAGCAGGCTTTATTGTACATTGTAGTTACTTGGGCGTTGGTAGCACTGACT
TTTATTGATATTGATCACATGCTACTGCCGGACCAGCTTACTTTGCCACTTTTATGGTTAGCACTAATCGCCTCAGTTAT
GGGTCATACCATTGCCCCTAGCGATGCCATTATTGGCGCAGCATGTGGCTATTTAAGCTTATGGAGTGTGTTTTGGTTGT
TTAAATTAATAACCGGCAAAGAAGGCATGGGCTATGGCGACTTTAAATTACTTGCGGTGTTTGGCGCATTGCTAGGTTGG
CAATCGTTATTGACCATTATTTTGCTCTCAAGCGTGGTTGGCGCAGTAATTGGCATTGCCCTACTGAGTATTCAAGGTAA
AGACAAAGCAACCCCCATTCCTTTTGGTCCTTACTTAGCAATAGCCGGTTGGATCACTATGCTATGGGGAACGCAACTGC
AAAACAGCTATTTTAATTTCATTGGCTACTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (26-140)

• Type IV leader peptidase family (Peptidase_A24) (151-259)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	51.195	96.7	0.495
pilD	Acinetobacter nosocomialis M2	50.853	96.7	0.492
pilD	Vibrio cholerae strain A1552	51.22	94.719	0.485
pilD	Vibrio campbellii strain DS40M4	50.172	96.04	0.482
pilD	Neisseria gonorrhoeae MS11	45.522	88.449	0.403