Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABZP26_RS14210 Genome accession   NZ_CP162514
Coordinates   3044793..3046019 (+) Length   408 a.a.
NCBI ID   WP_368485086.1    Uniprot ID   A0AB39AP56
Organism   Pseudoalteromonas sp. SD03     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3039793..3051019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZP26_RS14190 (ABZP26_14190) ampE 3041013..3041864 (-) 852 WP_024601737.1 beta-lactamase regulator AmpE -
  ABZP26_RS14195 (ABZP26_14195) ampD 3042152..3042697 (-) 546 WP_368485084.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ABZP26_RS14200 (ABZP26_14200) nadC 3042889..3043734 (+) 846 WP_290191705.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ABZP26_RS14205 (ABZP26_14205) pilA/pilAI 3044245..3044679 (+) 435 WP_368485085.1 pilin Machinery gene
  ABZP26_RS14210 (ABZP26_14210) pilC 3044793..3046019 (+) 1227 WP_368485086.1 type II secretion system F family protein Machinery gene
  ABZP26_RS14215 (ABZP26_14215) pilD 3046451..3047362 (+) 912 WP_036956689.1 A24 family peptidase Machinery gene
  ABZP26_RS14220 (ABZP26_14220) coaE 3047365..3047994 (+) 630 WP_036956690.1 dephospho-CoA kinase -
  ABZP26_RS14225 (ABZP26_14225) pilB 3048129..3049805 (+) 1677 WP_064664023.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABZP26_RS14230 (ABZP26_14230) yacG 3049870..3050100 (+) 231 WP_008114915.1 DNA gyrase inhibitor YacG -
  ABZP26_RS14235 (ABZP26_14235) - 3050160..3050648 (-) 489 WP_368485087.1 Spy/CpxP family protein refolding chaperone -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44136.05 Da        Isoelectric Point: 9.8523

>NTDB_id=1026723 ABZP26_RS14210 WP_368485086.1 3044793..3046019(+) (pilC) [Pseudoalteromonas sp. SD03]
MSNKNEKSNETFQWVGVSARGKRLEGELTGSSIALVKAQLRKQGITPSKVKRKAKPLFGIKSVQKITPKDIALVTRQIAT
MLMAGVPLIQSIEMIGSGSTNKSVSKLMGAIGDEVKAGLPLSNALRKYPRYFDDLYCDLVASGEQSGSLDKIFDRVALYK
EKSEALKSKIKKAMFYPIAVLVVALIVTSILLIFVVPQFQDIFAGFGAELPAFTLFVIAISEFMQANWWIALIAVVAFGY
IFKEAHLRSLKLRDATDRAILKLPVVGMILNKAAVARYARTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILEIKAEVS
SGNQMNWAMRNSKIFPDMVIQMVAIGEESGSLDGMLAKVATIYEQEVDDAVDGLSSLLEPLIMAVLGVLVGGLIIAMYLP
IFQLGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1026723 ABZP26_RS14210 WP_368485086.1 3044793..3046019(+) (pilC) [Pseudoalteromonas sp. SD03]
ATGAGTAATAAGAATGAAAAATCAAACGAAACCTTTCAATGGGTTGGTGTTAGTGCTAGAGGGAAAAGGCTGGAAGGTGA
GCTCACGGGATCTAGCATTGCTTTAGTTAAAGCCCAATTACGCAAACAAGGCATTACCCCCTCAAAAGTAAAACGTAAAG
CCAAACCACTATTTGGCATAAAAAGCGTACAAAAAATCACCCCAAAAGATATTGCTTTAGTGACAAGGCAAATTGCCACT
ATGCTAATGGCGGGTGTACCACTGATACAATCCATAGAAATGATAGGTTCAGGCTCTACCAATAAAAGTGTAAGCAAGCT
CATGGGCGCTATTGGTGATGAAGTAAAAGCTGGGTTGCCGCTTTCAAACGCACTTAGAAAATATCCTCGTTACTTTGATG
ATTTATATTGCGATTTAGTGGCATCAGGCGAACAGTCGGGCTCGCTTGATAAAATATTTGACCGCGTTGCGCTTTATAAA
GAAAAATCAGAGGCGCTAAAATCAAAAATTAAAAAAGCCATGTTTTACCCCATTGCAGTATTGGTTGTAGCACTGATTGT
TACCTCTATTTTGCTGATATTTGTAGTACCGCAATTTCAGGATATTTTTGCCGGTTTTGGCGCTGAGCTGCCCGCTTTTA
CATTATTTGTAATTGCTATTTCTGAATTTATGCAAGCAAATTGGTGGATAGCGCTCATTGCAGTGGTTGCCTTTGGTTAT
ATATTTAAAGAAGCACATTTAAGAAGTTTAAAACTGCGTGATGCTACCGACCGCGCCATACTTAAGCTCCCAGTTGTCGG
CATGATTTTAAATAAAGCCGCCGTGGCGCGCTATGCGCGTACTTTATCGACCACCTTTGCTGCGGGTGTACCGCTGGTAG
ATGCGCTTGATTCTGCAGCTGGAGCCTCAGGTAACGCAGTTTACCGTTATGCTATTTTAGAAATAAAAGCCGAGGTAAGC
TCAGGTAATCAAATGAACTGGGCGATGCGTAATTCAAAAATATTCCCTGATATGGTAATTCAAATGGTTGCCATTGGTGA
AGAGTCAGGATCGCTTGATGGTATGCTGGCAAAAGTTGCCACAATTTATGAGCAAGAAGTAGATGACGCAGTAGATGGCC
TATCGAGCTTACTTGAGCCGTTAATAATGGCGGTACTCGGTGTATTAGTCGGTGGCTTAATTATTGCCATGTACTTACCT
ATATTCCAACTAGGTTCAGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

64.5

98.039

0.632
  pilC Acinetobacter baylyi ADP1

55.392

100

0.554
  pilC Acinetobacter baumannii D1279779

55.147

100

0.551
  pilC Legionella pneumophila strain ERS1305867

55.172

99.51

0.549
  pilC Vibrio cholerae strain A1552

44.389

98.284

0.436
  pilC Vibrio campbellii strain DS40M4

43.176

98.775

0.426
  pilG Neisseria meningitidis 44/76-A

43.734

95.833

0.419
  pilG Neisseria gonorrhoeae MS11

43.478

95.833

0.417

Multiple sequence alignment