Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   AB3X08_RS06935 Genome accession   NZ_CP162490
Coordinates   1644264..1645301 (+) Length   345 a.a.
NCBI ID   WP_104557606.1    Uniprot ID   -
Organism   Xanthomonas tesorieronis strain DAR 34887     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1639264..1650301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3X08_RS06910 (AB3X08_06915) - 1639673..1640692 (+) 1020 WP_369937152.1 2-hydroxyacid dehydrogenase -
  AB3X08_RS06915 (AB3X08_06920) - 1640705..1641160 (-) 456 WP_369937154.1 DUF4426 domain-containing protein -
  AB3X08_RS06920 (AB3X08_06925) proC 1641177..1642019 (-) 843 WP_369937156.1 pyrroline-5-carboxylate reductase -
  AB3X08_RS06925 (AB3X08_06930) - 1642163..1643191 (-) 1029 WP_369938463.1 hypothetical protein -
  AB3X08_RS06930 (AB3X08_06935) - 1643489..1644139 (-) 651 WP_369938465.1 YggS family pyridoxal phosphate-dependent enzyme -
  AB3X08_RS06935 (AB3X08_06940) pilT 1644264..1645301 (+) 1038 WP_104557606.1 type IV pilus twitching motility protein PilT Machinery gene
  AB3X08_RS06940 (AB3X08_06945) pilU 1645401..1646531 (+) 1131 WP_184410693.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  AB3X08_RS06945 (AB3X08_06950) - 1646704..1647960 (+) 1257 WP_369938467.1 WD40 repeat domain-containing protein -
  AB3X08_RS06950 (AB3X08_06955) - 1647957..1649453 (+) 1497 WP_369937160.1 sensor domain-containing diguanylate cyclase -
  AB3X08_RS06955 (AB3X08_06960) - 1649506..1650108 (+) 603 WP_369937162.1 MFS transporter permease -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38564.20 Da        Isoelectric Point: 6.6653

>NTDB_id=1026471 AB3X08_RS06935 WP_104557606.1 1644264..1645301(+) (pilT) [Xanthomonas tesorieronis strain DAR 34887]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGCPPIFRQLIDQPQGLILVTGPTGSGKSTTLAGMIDYINKNEYGHILTVED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSAIQTGQQNGMQTLDQHL
QDLVKRSLITRNQAREYAKDKRVFE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1026471 AB3X08_RS06935 WP_104557606.1 1644264..1645301(+) (pilT) [Xanthomonas tesorieronis strain DAR 34887]
ATGGATATCGCTGAACTATTGGCGTTCTCGGTCAAGAACAAAGCATCCGACCTGCACTTGTCCGCCGGCCTGCCGCCGAT
GATCCGGGTCGATGGCGACGTGCGCCGCATCAACATCCCGGCGCTGGACCACAAACAGGTGCACGCGCTGGTATACGACA
TCATGTCGGACAAGCAGCGCCGCGACTACGAGGAGTTCCTCGAAGTCGACTTCTCGTTCGAGATTCCCAGCCTGGCGCGC
TTCCGCGTCAACGCGTTCAACCAGAACCGTGGCGCCGGCGCGGTGTTCCGCACCATTCCCTCGGAAGTGCTGACCCTGGA
AGACCTCGGCTGCCCGCCGATCTTCCGCCAGCTGATCGACCAGCCGCAGGGCCTGATCCTGGTCACCGGCCCGACCGGCT
CGGGCAAGTCGACCACGCTCGCCGGCATGATCGACTACATCAACAAGAACGAATACGGCCACATCCTCACCGTCGAGGAT
CCGATCGAATTCGTGCACACCTCGCAGAAGTGCCTGATCAACCAGCGCGAAGTGCACCGCGACACGCACGGCTTCAACGA
GGCGCTGCGTTCGGCGCTGCGCGAAGACCCGGACATCATCCTGGTCGGCGAGTTGCGCGACCTGGAAACCATCCGCCTGG
CGCTGACCGCGGCGGAAACCGGCCACCTGGTGTTCGGCACCCTGCACACCAGCTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTATTCCCGGCCGGCGAAAAGCCGATGGTGCGCTCGATGCTGTCCGAATCGCTGCGCGCGGTGATCTCGCAGGC
GCTGCTGAAGAAGGTCGGCGGCGGCCGCACCGCGGCGTGGGAGATCATGGTCGGCACCCCGGCGATCCGCAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTACTCGGCGATCCAGACCGGCCAGCAGAACGGCATGCAGACCCTGGACCAGCACCTG
CAGGACCTGGTCAAGCGCAGCCTGATCACCCGCAACCAGGCGCGCGAGTACGCCAAGGACAAGCGTGTGTTCGAGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

80.233

99.71

0.8
  pilT Acinetobacter baumannii D1279779

80.233

99.71

0.8
  pilT Acinetobacter baumannii strain A118

80.233

99.71

0.8
  pilT Pseudomonas stutzeri DSM 10701

79.07

99.71

0.788
  pilT Acinetobacter baylyi ADP1

78.488

99.71

0.783
  pilT Pseudomonas aeruginosa PAK

79.351

98.261

0.78
  pilT Legionella pneumophila strain Lp02

75

99.71

0.748
  pilT Legionella pneumophila strain ERS1305867

75

99.71

0.748
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.125

95.362

0.678
  pilT Vibrio cholerae strain A1552

71.125

95.362

0.678
  pilT Neisseria meningitidis 8013

65.982

98.841

0.652
  pilT Neisseria gonorrhoeae MS11

65.689

98.841

0.649
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.855

100

0.499
  pilU Pseudomonas stutzeri DSM 10701

40.708

98.261

0.4
  pilU Acinetobacter baylyi ADP1

40.294

98.551

0.397
  pilU Vibrio cholerae strain A1552

40.597

97.101

0.394

Multiple sequence alignment