Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   AB3X08_RS06940 Genome accession   NZ_CP162490
Coordinates   1645401..1646531 (+) Length   376 a.a.
NCBI ID   WP_184410693.1    Uniprot ID   -
Organism   Xanthomonas tesorieronis strain DAR 34887     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1640401..1651531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3X08_RS06915 (AB3X08_06920) - 1640705..1641160 (-) 456 WP_369937154.1 DUF4426 domain-containing protein -
  AB3X08_RS06920 (AB3X08_06925) proC 1641177..1642019 (-) 843 WP_369937156.1 pyrroline-5-carboxylate reductase -
  AB3X08_RS06925 (AB3X08_06930) - 1642163..1643191 (-) 1029 WP_369938463.1 hypothetical protein -
  AB3X08_RS06930 (AB3X08_06935) - 1643489..1644139 (-) 651 WP_369938465.1 YggS family pyridoxal phosphate-dependent enzyme -
  AB3X08_RS06935 (AB3X08_06940) pilT 1644264..1645301 (+) 1038 WP_104557606.1 type IV pilus twitching motility protein PilT Machinery gene
  AB3X08_RS06940 (AB3X08_06945) pilU 1645401..1646531 (+) 1131 WP_184410693.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  AB3X08_RS06945 (AB3X08_06950) - 1646704..1647960 (+) 1257 WP_369938467.1 WD40 repeat domain-containing protein -
  AB3X08_RS06950 (AB3X08_06955) - 1647957..1649453 (+) 1497 WP_369937160.1 sensor domain-containing diguanylate cyclase -
  AB3X08_RS06955 (AB3X08_06960) - 1649506..1650108 (+) 603 WP_369937162.1 MFS transporter permease -
  AB3X08_RS06960 (AB3X08_06965) - 1650304..1650978 (+) 675 WP_369938469.1 YitT family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41896.19 Da        Isoelectric Point: 6.8811

>NTDB_id=1026472 AB3X08_RS06940 WP_184410693.1 1645401..1646531(+) (pilU) [Xanthomonas tesorieronis strain DAR 34887]
MSTIDFTSFLKLMAHQKASDLFITSGMPPAIKVHGKITPITQTPLTSQQSRDLVLNVMTPAQREEFEKTHECNFAIGVAG
VGRFRVSCFYQRNQVGMVLRRIETRIPTVDELNLPPVIKTLAMTKRGIIIFVGATGTGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEFVHKHEGCIITQREVGIDTDSWENALKNTLRQAPDVIMIGEVRTREGMDHAISFAETGHLVLCTLHANNANQAM
DRIINFFPEDRRSQLLMDLSLNLRGVVAQQLIPTPDGKGRRVAMEIMLGTPLVQDYIREGEIHKLKDVMKESTNLGMKTF
DQSLFELYQAGEISYEDALRHADSQNEVRLRIKLAQGGDAKTLAQGLDGVEIAEVR

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=1026472 AB3X08_RS06940 WP_184410693.1 1645401..1646531(+) (pilU) [Xanthomonas tesorieronis strain DAR 34887]
ATGAGCACCATCGACTTCACCTCGTTCCTGAAACTGATGGCGCACCAGAAGGCGTCGGATCTGTTCATCACCTCGGGCAT
GCCGCCGGCGATCAAGGTGCACGGCAAGATCACCCCGATCACGCAGACGCCGCTGACCTCGCAGCAGAGCCGCGACCTCG
TTCTGAACGTGATGACGCCGGCGCAGCGCGAGGAGTTCGAAAAGACCCACGAGTGCAACTTCGCCATCGGCGTGGCCGGA
GTGGGGCGCTTCCGCGTCAGCTGCTTCTACCAGCGCAACCAGGTCGGCATGGTGCTGCGCCGGATCGAAACCCGCATCCC
CACTGTCGACGAGCTGAACCTGCCGCCGGTGATCAAGACCCTGGCGATGACCAAGCGCGGCATCATCATCTTCGTCGGCG
CCACCGGCACCGGCAAGTCGACCTCGCTGGCGGCGATGATCGGCTACCGCAACCAGAACTCCACCGGCCACATCATCACC
ATCGAGGACCCGATCGAGTTCGTGCACAAGCACGAGGGCTGCATCATCACCCAGCGCGAAGTCGGCATCGACACCGACAG
CTGGGAGAACGCGCTGAAGAACACGCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGCACCCGCGAAGGCA
TGGACCATGCGATTTCCTTCGCCGAAACCGGCCACCTGGTGCTGTGCACTCTGCATGCCAACAATGCCAACCAGGCGATG
GACCGCATCATCAACTTCTTCCCCGAAGACCGCCGCAGCCAGCTGCTGATGGACCTGTCGCTGAACCTGCGCGGCGTGGT
CGCCCAGCAACTGATCCCCACGCCCGACGGCAAGGGCCGCCGGGTGGCGATGGAGATCATGCTCGGCACGCCGCTGGTGC
AGGACTACATCCGCGAGGGCGAGATCCACAAGCTCAAGGACGTGATGAAGGAATCCACCAACCTGGGCATGAAGACCTTC
GACCAGAGCCTGTTCGAGCTGTACCAGGCCGGCGAGATCAGCTACGAGGACGCGCTGCGCCACGCCGACTCGCAGAACGA
AGTGCGCCTGCGCATCAAGCTGGCCCAGGGCGGCGACGCCAAGACCCTGGCGCAGGGGCTGGACGGGGTGGAGATCGCCG
AGGTGCGCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(117-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

66.485

97.606

0.649
  pilU Acinetobacter baylyi ADP1

63.585

94.947

0.604
  pilU Vibrio cholerae strain A1552

53.652

94.681

0.508
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.571

93.085

0.396
  pilT Pseudomonas aeruginosa PAK

41.003

90.16

0.37
  pilT Acinetobacter baumannii strain A118

40.407

91.489

0.37
  pilT Acinetobacter nosocomialis M2

40.407

91.489

0.37
  pilT Acinetobacter baumannii D1279779

40.407

91.489

0.37
  pilT Legionella pneumophila strain ERS1305867

40.597

89.096

0.362
  pilT Legionella pneumophila strain Lp02

40.597

89.096

0.362

Multiple sequence alignment