Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   AB3X07_RS07330 Genome accession   NZ_CP162488
Coordinates   1737072..1738109 (+) Length   345 a.a.
NCBI ID   WP_043095750.1    Uniprot ID   -
Organism   Xanthomonas medicagonis strain DAR 35659     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1732072..1743109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3X07_RS07305 (AB3X07_07305) soxR 1732948..1733385 (+) 438 WP_369943769.1 redox-sensitive transcriptional activator SoxR -
  AB3X07_RS07310 (AB3X07_07310) - 1733509..1733964 (-) 456 WP_369943770.1 DUF4426 domain-containing protein -
  AB3X07_RS07315 (AB3X07_07315) proC 1733979..1734821 (-) 843 WP_369943771.1 pyrroline-5-carboxylate reductase -
  AB3X07_RS07320 (AB3X07_07320) - 1734952..1735980 (-) 1029 WP_369944683.1 hypothetical protein -
  AB3X07_RS07325 (AB3X07_07325) - 1736299..1736949 (-) 651 WP_369944685.1 YggS family pyridoxal phosphate-dependent enzyme -
  AB3X07_RS07330 (AB3X07_07330) pilT 1737072..1738109 (+) 1038 WP_043095750.1 type IV pilus twitching motility protein PilT Machinery gene
  AB3X07_RS07335 (AB3X07_07335) pilU 1738247..1739377 (+) 1131 WP_184410693.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  AB3X07_RS07340 (AB3X07_07340) - 1739537..1740799 (+) 1263 WP_369943772.1 WD40 repeat domain-containing protein -
  AB3X07_RS07345 (AB3X07_07345) - 1740796..1742295 (+) 1500 WP_369943773.1 sensor domain-containing diguanylate cyclase -
  AB3X07_RS07350 (AB3X07_07350) - 1742531..1742995 (+) 465 WP_369943774.1 MFS transporter permease -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38578.22 Da        Isoelectric Point: 6.6653

>NTDB_id=1026434 AB3X07_RS07330 WP_043095750.1 1737072..1738109(+) (pilT) [Xanthomonas medicagonis strain DAR 35659]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGCPPIFRQLIDQPQGLILVTGPTGSGKSTTLAGMIDYINKNEYGHILTVED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSAIQTGQQNGMQTLDQHL
QDLVKRSLITRNQAREYAKDKRIFE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1026434 AB3X07_RS07330 WP_043095750.1 1737072..1738109(+) (pilT) [Xanthomonas medicagonis strain DAR 35659]
ATGGATATCGCTGAACTATTGGCGTTCTCGGTCAAGAACAAAGCGTCCGACCTGCACCTGTCCGCCGGCCTGCCGCCGAT
GATCCGGGTCGATGGCGACGTCCGCCGCATCAACATCCCGGCGCTGGACCACAAGCAGGTGCACGCGCTTGTCTACGACA
TCATGTCGGACAAGCAGCGCCGCGACTACGAGGAGTTCCTCGAGGTCGACTTCTCCTTCGAGATCCCCAGCCTGGCGCGC
TTCCGCGTCAACGCCTTCAACCAGAATCGCGGCGCCGGCGCGGTGTTCCGCACCATTCCCTCGGAAGTGCTGACCCTGGA
AGACCTGGGCTGCCCGCCGATCTTCCGCCAGCTGATCGACCAGCCGCAGGGCCTGATCCTGGTCACCGGGCCGACCGGCT
CGGGCAAGTCGACCACGCTTGCGGGCATGATCGACTATATCAACAAGAACGAATACGGCCACATCCTCACCGTCGAGGAT
CCGATCGAATTCGTGCACACCTCGCAGAAGTGCCTGATCAACCAGCGCGAGGTGCACCGCGACACCCACGGCTTCAACGA
GGCGTTGCGCTCGGCGCTGCGCGAAGACCCGGACATCATCCTGGTCGGCGAGTTGCGCGACCTGGAAACCATTCGCCTGG
CGCTGACCGCCGCGGAAACCGGCCACCTGGTGTTCGGCACCCTGCACACCAGTTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCCGCCGGCGAGAAGCCGATGGTGCGCTCGATGCTGTCCGAATCGCTGCGCGCGGTGATCTCGCAGGC
GCTGCTGAAGAAGGTCGGCGGCGGCCGCACCGCGGCCTGGGAAATCATGGTCGGCACCCCCGCCATCCGCAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTACTCGGCGATCCAGACCGGCCAGCAGAACGGCATGCAGACCCTGGACCAGCACCTG
CAGGACCTGGTCAAGCGCAGCCTGATCACCCGCAACCAGGCGCGCGAGTACGCCAAGGACAAGCGCATCTTCGAGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

80.233

99.71

0.8
  pilT Acinetobacter baumannii D1279779

80.233

99.71

0.8
  pilT Acinetobacter baumannii strain A118

80.233

99.71

0.8
  pilT Pseudomonas stutzeri DSM 10701

79.07

99.71

0.788
  pilT Acinetobacter baylyi ADP1

78.488

99.71

0.783
  pilT Pseudomonas aeruginosa PAK

79.351

98.261

0.78
  pilT Legionella pneumophila strain Lp02

75

99.71

0.748
  pilT Legionella pneumophila strain ERS1305867

75

99.71

0.748
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.125

95.362

0.678
  pilT Vibrio cholerae strain A1552

71.125

95.362

0.678
  pilT Neisseria meningitidis 8013

65.982

98.841

0.652
  pilT Neisseria gonorrhoeae MS11

65.689

98.841

0.649
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.855

100

0.499
  pilU Pseudomonas stutzeri DSM 10701

40.708

98.261

0.4
  pilU Acinetobacter baylyi ADP1

40.294

98.551

0.397
  pilU Vibrio cholerae strain A1552

40.597

97.101

0.394

Multiple sequence alignment