Detailed information NTG1024718

Bioinformatically predicted

Overview

• Name: comX/sigX
• Type: Regulator
• Locus tag: AB1F57_RS12625
• Genome accession: NZ_CP162268
• Coordinates: 2503029..2503502 (-)
• Length: 157 a.a.
• NCBI ID: WP_249339114.1
• Uniprot ID: -
• Organism: Streptococcus sp. ZY1909104
• Function: activate transcription of late competence genes (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	2504413..2505717	2503029..2503502	flank	911

Gene organization within MGE regions

Location: 2503029..2505717

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB1F57_RS12625 (AB1F57_12625)	comX/sigX	2503029..2503502 (-)	474	WP_249339114.1	sigma-70 family RNA polymerase sigma factor	Regulator
AB1F57_RS12630 (AB1F57_12630)	-	2503592..2504137 (-)	546	WP_245170008.1	nucleotidyltransferase family protein	-
AB1F57_RS12635 (AB1F57_12635)	-	2504461..2505717 (+)	1257	WP_174853283.1	ISL3 family transposase	-

Sequence

Protein

• Length: 157 a.a.
• Molecular weight: 19230.08 Da
• Isoelectric Point: 9.4820

>NTDB_id=1024718 AB1F57_RS12625 WP_249339114.1 2503029..2503502(-) (comX/sigX) [Streptococcus sp. ZY1909104]
MMKFEKVYDGVKGIVNKARKEFYIKLWDRDDWEQEGMITLFELLEDQPWLIGERAQLYCYFKVKFRNRIKDYVRRQESKK
RKFDRMSHEDIHELSQVIQSPGLVNDELLLLRGDWRDYRKNLSMDQLENYEKLISGQSFNGRKNMLRGLQEHLKDFR

Nucleotide

• Length: 474 bp

>NTDB_id=1024718 AB1F57_RS12625 WP_249339114.1 2503029..2503502(-) (comX/sigX) [Streptococcus sp. ZY1909104]
ATGATGAAATTTGAAAAGGTCTATGATGGCGTAAAAGGGATTGTCAACAAGGCTCGAAAAGAGTTTTATATCAAACTGTG
GGACAGAGATGACTGGGAGCAGGAAGGCATGATAACCTTGTTTGAATTATTGGAGGATCAACCATGGTTGATTGGGGAAA
GAGCCCAGTTGTATTGTTATTTCAAGGTTAAATTCAGAAATCGGATTAAGGACTATGTTCGCAGACAGGAAAGTAAAAAG
CGCAAGTTTGACCGAATGTCTCATGAAGACATACATGAACTATCACAAGTAATACAATCGCCAGGTTTAGTCAATGACGA
GCTATTGTTGTTGAGAGGTGACTGGAGAGATTATCGAAAAAATTTGTCTATGGACCAATTGGAAAATTATGAAAAACTAA
TTAGTGGTCAGAGTTTCAATGGTCGTAAGAATATGCTTAGGGGGTTACAAGAACATTTAAAGGACTTTCGATGA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comX/sigX	Streptococcus suis D9	81.41	99.363	0.809
comX/sigX	Streptococcus suis isolate S10	80.769	99.363	0.803
comX/sigX	Streptococcus suis P1/7	80.769	99.363	0.803
comR/comR2	Streptococcus gordonii str. Challis substr. CH1	47.097	98.726	0.465
comR/comR1	Streptococcus gordonii str. Challis substr. CH1	47.097	98.726	0.465
comX/sigX/comX1/sigX1	Streptococcus mitis SK321	44.444	97.452	0.433
comX/sigX	Streptococcus mutans UA159	43.506	98.089	0.427
comX/sigX/comX2/sigX2	Streptococcus mitis SK321	43.137	97.452	0.42
comX/sigX/comX2/sigX2	Streptococcus mitis NCTC 12261	42.484	97.452	0.414
comX/sigX/comX1/sigX1	Streptococcus mitis NCTC 12261	41.83	97.452	0.408
comX/comX2	Streptococcus pneumoniae TIGR4	42.384	96.178	0.408
comX/comX1	Streptococcus pneumoniae TIGR4	42.384	96.178	0.408
comX/comX2	Streptococcus pneumoniae D39	41.722	96.178	0.401
comX/comX2	Streptococcus pneumoniae Rx1	41.722	96.178	0.401
comX/comX1	Streptococcus pneumoniae Rx1	41.722	96.178	0.401
comX/comX1	Streptococcus pneumoniae D39	41.722	96.178	0.401
comX/comX2	Streptococcus pneumoniae R6	41.722	96.178	0.401
comX/comX1	Streptococcus pneumoniae R6	41.722	96.178	0.401
comX/sigX/comX1/sigX1	Streptococcus pyogenes MGAS315	41.333	95.541	0.395
comX/sigX/comX2/sigX2	Streptococcus pyogenes MGAS315	41.333	95.541	0.395
comX/sigX/comX1/sigX1	Streptococcus pyogenes JRS4	40.667	95.541	0.389
comX/sigX/comX2/sigX2	Streptococcus pyogenes MGAS8232	40.667	95.541	0.389
comX/sigX/comX1/sigX1	Streptococcus pyogenes MGAS8232	40.667	95.541	0.389
comX/sigX/comX2/sigX2	Streptococcus pyogenes JRS4	40.667	95.541	0.389
comX	Streptococcus thermophilus LMG 18311	39.216	97.452	0.382
comX	Streptococcus thermophilus LMD-9	39.216	97.452	0.382
comX/sigX	Streptococcus infantarius subsp. infantarius ATCC BAA-102	37.58	100	0.376
comX/sigX	Streptococcus salivarius strain HSISS4	38.562	97.452	0.376
comX	Streptococcus salivarius SK126	38.562	97.452	0.376