Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DQN52_RS06540 Genome accession   NZ_LS483426
Coordinates   1216541..1217503 (-) Length   320 a.a.
NCBI ID   WP_003786011.1    Uniprot ID   F5S613
Organism   Kingella kingae strain NCTC10529     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1211541..1222503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN52_RS06510 (NCTC10529_01271) rsmG 1212412..1213044 (+) 633 WP_032827633.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  DQN52_RS06515 (NCTC10529_01272) - 1213047..1213808 (+) 762 WP_032827634.1 ParA family protein -
  DQN52_RS06520 (NCTC10529_01273) - 1213865..1214116 (+) 252 WP_003786003.1 hypothetical protein -
  DQN52_RS10960 - 1214144..1214311 (+) 168 WP_169309633.1 hypothetical protein -
  DQN52_RS06525 (NCTC10529_01274) pyrE 1214392..1215039 (-) 648 WP_003786005.1 orotate phosphoribosyltransferase -
  DQN52_RS06530 (NCTC10529_01275) - 1215115..1216065 (-) 951 WP_003786007.1 iron chelate uptake ABC transporter family permease subunit -
  DQN52_RS06535 (NCTC10529_01276) - 1216127..1216495 (-) 369 WP_003786009.1 hypothetical protein -
  DQN52_RS06540 (NCTC10529_01277) ceuB 1216541..1217503 (-) 963 WP_003786011.1 ABC transporter permease Machinery gene
  DQN52_RS06545 (NCTC10529_01278) - 1217677..1218696 (-) 1020 WP_003786012.1 siderophore ABC transporter substrate-binding protein -
  DQN52_RS06550 (NCTC10529_01279) - 1218808..1220847 (-) 2040 WP_003786014.1 TonB-dependent receptor domain-containing protein -
  DQN52_RS06555 (NCTC10529_01280) - 1221058..1222467 (+) 1410 WP_003786017.1 leucyl aminopeptidase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 33978.18 Da        Isoelectric Point: 9.7743

>NTDB_id=1024389 DQN52_RS06540 WP_003786011.1 1216541..1217503(-) (ceuB) [Kingella kingae strain NCTC10529]
MSTKSLYTLSILFTIILFFASLSIGVANFSWANVFSGSLNDSTQVMLISRLPRTFAILLTGASMGVAGMIMQILLKNRFV
EPSMVGASQSAILGLLLMSLLLPSAALLTKMSVAAVAALLGMLLFMAMIRKLPPTAQLLVPLVGIIFGGVIESVYTFIAY
ETDMLQLISVWQSGDFSGVLLGRYELLWLTGALAVVAYLIADQLTIVGLGESVAVNLGINRNVILWAGLVIVALITSLVV
VTVGNIPFIGLVVPNIVSRLLGDKLRASLPAVALLGAVLVLLCDIVGRVIVFPFEIPVATVFGVLGTVLFLGLLFRQPAR

Nucleotide


Download         Length: 963 bp        

>NTDB_id=1024389 DQN52_RS06540 WP_003786011.1 1216541..1217503(-) (ceuB) [Kingella kingae strain NCTC10529]
ATGTCCACAAAATCCCTTTACACCCTATCCATTTTGTTCACGATTATTTTATTTTTCGCTAGTTTATCCATTGGTGTGGC
GAATTTTTCTTGGGCGAATGTGTTTTCAGGCAGCCTGAACGATTCCACGCAAGTGATGTTAATCAGCCGTTTGCCACGTA
CGTTTGCGATTTTGCTGACAGGTGCGTCTATGGGCGTGGCGGGCATGATTATGCAGATTTTGCTGAAAAATCGCTTTGTT
GAGCCGTCTATGGTGGGAGCGAGTCAGAGTGCGATTTTGGGGCTGTTGCTGATGTCGTTGCTGCTGCCGAGCGCGGCTTT
ATTGACGAAAATGTCGGTGGCGGCGGTGGCAGCGTTGTTGGGTATGTTGTTGTTTATGGCGATGATTCGGAAATTACCGC
CCACCGCGCAACTGCTTGTGCCGTTGGTGGGAATTATTTTTGGTGGCGTGATTGAATCGGTTTACACGTTTATTGCGTAT
GAAACGGATATGTTGCAACTGATTAGCGTGTGGCAGAGTGGCGATTTTTCGGGCGTGTTGTTGGGGCGGTATGAATTGCT
GTGGCTGACGGGGGCGTTGGCTGTGGTGGCGTATTTGATTGCTGACCAACTGACGATTGTGGGTTTGGGCGAGTCGGTGG
CGGTGAATTTGGGGATTAACCGCAATGTGATTTTGTGGGCTGGGCTGGTGATTGTGGCGTTGATTACGTCGTTGGTGGTG
GTTACGGTAGGAAATATTCCGTTTATTGGGCTGGTTGTGCCGAATATTGTGAGCCGTTTGTTAGGCGATAAGCTGCGTGC
GAGTTTGCCTGCTGTGGCGTTGTTGGGGGCGGTGTTGGTGTTGCTGTGTGATATTGTGGGGCGTGTGATTGTGTTTCCGT
TTGAAATTCCTGTGGCAACGGTGTTTGGGGTGTTGGGGACGGTGTTGTTTTTGGGGCTACTTTTCAGGCAGCCTGCACGG
TAG

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(14-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5S613

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

43.21

100

0.438

Multiple sequence alignment