Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   AB2N10_RS11765 Genome accession   NZ_CP160906
Coordinates   2572120..2573154 (-) Length   344 a.a.
NCBI ID   WP_354625394.1    Uniprot ID   -
Organism   Psychromonas sp. MME1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2567120..2578154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2N10_RS11735 mobB 2567169..2567693 (-) 525 WP_369433878.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  AB2N10_RS11740 - 2567821..2568453 (+) 633 WP_354625398.1 LysE family translocator -
  AB2N10_RS11745 - 2568508..2569422 (-) 915 WP_369433879.1 aldo/keto reductase family oxidoreductase -
  AB2N10_RS11750 - 2569870..2570055 (+) 186 WP_354625397.1 hypothetical protein -
  AB2N10_RS11755 yaaA 2570143..2570916 (-) 774 WP_354625396.1 peroxide stress protein YaaA -
  AB2N10_RS11760 pilU 2570991..2572106 (-) 1116 WP_354625395.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  AB2N10_RS11765 pilT 2572120..2573154 (-) 1035 WP_354625394.1 type IV pilus twitching motility protein PilT Machinery gene
  AB2N10_RS11770 - 2573176..2573874 (+) 699 WP_354625490.1 YggS family pyridoxal phosphate-dependent enzyme -
  AB2N10_RS11775 proC 2573901..2574725 (+) 825 WP_354625393.1 pyrroline-5-carboxylate reductase -
  AB2N10_RS11780 - 2574750..2575292 (+) 543 WP_354625392.1 YggT family protein -
  AB2N10_RS11785 yggU 2575292..2575594 (+) 303 WP_369433880.1 DUF167 family protein YggU -
  AB2N10_RS11790 - 2575588..2576028 (+) 441 WP_354625390.1 DUF4426 domain-containing protein -
  AB2N10_RS11795 rdgB 2576042..2576643 (+) 602 Protein_2284 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  AB2N10_RS11800 hemW 2576708..2577850 (+) 1143 WP_354625389.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38153.90 Da        Isoelectric Point: 6.8316

>NTDB_id=1022237 AB2N10_RS11765 WP_354625394.1 2572120..2573154(-) (pilT) [Psychromonas sp. MME1]
MDITELLAFSVKHNASDLHLSAGVPPMIRVDGEVRKINIPALEHKEVHSLIYDIMNDKQRKDFEEQLETDFSFEIPDLAR
FRVNAFNQKRGAGAVFRTIPSKVLTLDDLHAPAIFKKISEFPRGLVLVTGPTGSGKSTTLAAMIDYINESRHEHILTIED
PIEFVHESKKALINQREVYKDTLGFDRALKSALREDPDVILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
IDVFPAAEKGMVRSMLSESLRAVISQTLLKKNGGGRVAAHEIMLGIPAIRNLIREDKVAQMYSVIQTGMVHGMQTLDQCL
RNLVSQGQVSHADAAQKASDPKTF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1022237 AB2N10_RS11765 WP_354625394.1 2572120..2573154(-) (pilT) [Psychromonas sp. MME1]
ATGGATATTACAGAGTTATTAGCTTTTAGTGTAAAGCATAATGCATCAGATCTACACCTTTCTGCTGGCGTTCCTCCAAT
GATCAGGGTAGATGGCGAAGTTCGCAAGATAAATATACCAGCTTTAGAGCATAAAGAGGTGCATAGTCTAATTTATGACA
TTATGAATGATAAGCAGCGTAAAGATTTTGAAGAGCAGCTAGAAACCGATTTTTCATTTGAAATTCCAGACTTAGCCCGT
TTCCGTGTTAATGCATTTAACCAAAAACGAGGCGCTGGTGCGGTATTTCGTACCATCCCAAGCAAAGTATTAACATTGGA
TGATTTACATGCACCCGCGATTTTTAAGAAAATATCTGAATTTCCCCGTGGTTTGGTTTTAGTAACAGGGCCTACGGGAT
CGGGTAAATCAACGACACTCGCAGCGATGATTGATTATATCAATGAAAGTCGTCATGAACATATTTTGACCATCGAAGAT
CCGATCGAGTTCGTGCATGAAAGTAAAAAAGCGCTGATTAACCAACGTGAAGTCTATAAAGATACCCTTGGTTTTGATCG
CGCCCTTAAAAGCGCCTTGCGTGAAGATCCCGATGTTATTCTGGTCGGTGAGATGCGTGATTTAGAAACCATTCGTTTAG
CATTAACAGCCGCTGAAACGGGCCACCTCGTATTTGGAACATTGCACACCACATCCGCAGCCAAAACCATAGACCGTGTT
ATCGATGTATTTCCTGCGGCAGAAAAAGGCATGGTGCGATCTATGTTATCTGAGTCATTACGTGCGGTTATTTCACAAAC
GCTATTAAAGAAAAATGGCGGTGGTCGTGTTGCTGCACACGAGATCATGCTTGGTATCCCAGCCATTCGTAACCTTATTC
GTGAAGATAAAGTTGCACAAATGTATTCGGTTATTCAAACTGGGATGGTGCATGGTATGCAAACATTAGATCAATGTTTA
CGTAACCTAGTGAGCCAGGGGCAAGTTTCTCATGCAGATGCGGCACAAAAAGCATCTGACCCTAAAACTTTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

80.814

100

0.808
  pilT Acinetobacter baumannii D1279779

80.523

100

0.805
  pilT Acinetobacter baumannii strain A118

80.523

100

0.805
  pilT Pseudomonas stutzeri DSM 10701

79.36

100

0.794
  pilT Pseudomonas aeruginosa PAK

79.36

100

0.794
  pilT Acinetobacter baylyi ADP1

78.488

100

0.785
  pilT Legionella pneumophila strain Lp02

73.547

100

0.735
  pilT Legionella pneumophila strain ERS1305867

73.547

100

0.735
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

70.435

100

0.706
  pilT Vibrio cholerae strain A1552

70.435

100

0.706
  pilT Neisseria gonorrhoeae MS11

66.957

100

0.672
  pilT Neisseria meningitidis 8013

66.957

100

0.672
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.884

100

0.52
  pilU Acinetobacter baylyi ADP1

41.618

100

0.419
  pilU Vibrio cholerae strain A1552

41.888

98.547

0.413
  pilU Pseudomonas stutzeri DSM 10701

41.493

97.384

0.404

Multiple sequence alignment