Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   APECO2_RS22170 Genome accession   NZ_CP006834
Coordinates   4245534..4246514 (-) Length   326 a.a.
NCBI ID   WP_001696140.1    Uniprot ID   -
Organism   Escherichia coli APEC O2-211     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4240534..4251514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APECO2_RS22140 (APECO2_17300) yggI 4241199..4241696 (+) 498 WP_001696137.1 SprT family zinc-dependent metalloprotease -
  APECO2_RS22145 (APECO2_17305) endA 4241791..4242498 (+) 708 WP_001305312.1 deoxyribonuclease I -
  APECO2_RS22150 (APECO2_17310) rsmE 4242578..4243309 (+) 732 WP_001300912.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  APECO2_RS22155 (APECO2_17315) gshB 4243322..4244272 (+) 951 WP_000593258.1 glutathione synthase -
  APECO2_RS22160 (APECO2_17320) yqgE 4244381..4244944 (+) 564 WP_001318029.1 YqgE/AlgH family protein -
  APECO2_RS22165 (APECO2_17325) ruvX 4244944..4245360 (+) 417 WP_000017111.1 Holliday junction resolvase RuvX -
  APECO2_RS22170 (APECO2_17330) pilT 4245534..4246514 (-) 981 WP_001696140.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  APECO2_RS22175 (APECO2_17335) yggS 4246532..4247236 (+) 705 WP_000997795.1 pyridoxal phosphate homeostasis protein -
  APECO2_RS22180 (APECO2_17340) yggT 4247254..4247820 (+) 567 WP_032284855.1 osmotic shock tolerance protein YggT -
  APECO2_RS22185 (APECO2_17345) yggU 4247817..4248107 (+) 291 WP_001277194.1 DUF167 family protein YggU -
  APECO2_RS22190 (APECO2_17350) rdgB 4248115..4248708 (+) 594 WP_001174747.1 XTP/dITP diphosphatase -
  APECO2_RS22195 (APECO2_17355) hemW 4248701..4249837 (+) 1137 WP_000239950.1 radical SAM family heme chaperone HemW -
  APECO2_RS22200 (APECO2_17360) - 4250155..4251141 (+) 987 WP_000784004.1 TRAP transporter substrate-binding protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35987.21 Da        Isoelectric Point: 5.9975

>NTDB_id=101605 APECO2_RS22170 WP_001696140.1 4245534..4246514(-) (pilT) [Escherichia coli APEC O2-211]
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRAILLENGQLDFAVSLAENQRLRG
SAFAQRQGISLALRLLPSHCPQLEQLGAPAVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQQR
VKEGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=101605 APECO2_RS22170 WP_001696140.1 4245534..4246514(-) (pilT) [Escherichia coli APEC O2-211]
ATGAATATGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACG
ATGGCGTATTCGCGGGCGAATGGAAGCTGCGCCGTTTGATGCGCCGGACGTCGAAGAGCTACTGCGGGAGTGGCTGGATG
ACGATCAGCGGGCAATATTGCTGGAGAATGGTCAGCTGGATTTTGCCGTGTCGCTGGCGGAAAACCAGCGATTGCGTGGC
AGTGCGTTCGCGCAACGGCAAGGCATTTCGCTGGCGTTACGGCTGTTACCTTCGCACTGCCCGCAGCTCGAACAGCTTGG
CGCACCAGCGGTATTGCCGGAATTACTCAAGAGCGAGAATGGCCTGATTCTGGTGACGGGGGCGACGGGGAGTGGCAAAT
CTACCACGCTGGCGGCGATGGTTGGCTATCTCAATCAACATGCCGATGCGCATATTCTGACGCTGGAAGATCCTGTCGAA
TATCTCTATGCAAGCCAGCGATGTTTGATCCAGCAGCGGGAAATCGGTTTGCATTGTATGACGTTCGCATCGGGATTGCG
GGCTGCATTGCGGGAAGATCCTGATGTGATTTTGCTCGGAGAGCTGCGTGACAGCGAGACAATCCGTCTGGCGCTGACGG
CGGCAGAAACCGGGCATTTGGTGCTGGCAACATTACATACGCGTGGTGCGGCGCAGGCAGTTGAGCGACTGGTAGATTCA
TTTCCGGCGCAGGAAAAAGATCCCGTGCGTAATCAACTGGCAGGTAGTTTACGGGCGGTGTTGTCACAAAAGCTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGTTGTTTGAATTGCTGATTAACACACCCGCGGTGGGGAATTTGATTCGTGAAGGGA
AAACCCACCAGTTACCGCATGTTATTCAAACCGGGCAGCAGGTGGGGATGATAACGTTTCAGCAGAGTTATCAGCAGCGG
GTGAAAGAAGGGCGCTTGTGA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(62-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.541

100

0.497
  pilT Vibrio cholerae strain A1552

49.541

100

0.497
  pilT Neisseria meningitidis 8013

48.78

100

0.491
  pilT Neisseria gonorrhoeae MS11

48.476

100

0.488
  pilT Acinetobacter baylyi ADP1

46.789

100

0.469
  pilT Acinetobacter baumannii D1279779

46.483

100

0.466
  pilT Acinetobacter nosocomialis M2

46.483

100

0.466
  pilT Acinetobacter baumannii strain A118

46.483

100

0.466
  pilT Pseudomonas stutzeri DSM 10701

46.483

100

0.466
  pilT Pseudomonas aeruginosa PAK

46.177

100

0.463
  pilT Legionella pneumophila strain ERS1305867

44.954

100

0.451
  pilT Legionella pneumophila strain Lp02

44.954

100

0.451
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

39.514

100

0.399
  pilU Pseudomonas stutzeri DSM 10701

37.576

100

0.38
  pilB Legionella pneumophila strain ERS1305867

31.152

100

0.365
  pilU Acinetobacter baylyi ADP1

36.646

98.773

0.362

Multiple sequence alignment