Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ABOD76_RS11880 Genome accession   NZ_CP158299
Coordinates   1330925..1332151 (-) Length   408 a.a.
NCBI ID   WP_350245058.1    Uniprot ID   A0AAU7UF00
Organism   Deinococcus sonorensis KR-87     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1325925..1337151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABOD76_RS11855 (ABOD76_11815) - 1326492..1326845 (+) 354 WP_350245052.1 MmcQ/YjbR family DNA-binding protein -
  ABOD76_RS11860 (ABOD76_11820) - 1326853..1327212 (-) 360 WP_350245053.1 MliC family protein -
  ABOD76_RS11865 (ABOD76_11825) - 1327268..1327879 (-) 612 WP_350245054.1 hypothetical protein -
  ABOD76_RS11870 (ABOD76_11830) - 1327945..1329156 (-) 1212 WP_350245055.1 hypothetical protein -
  ABOD76_RS11875 (ABOD76_11835) - 1329264..1330838 (-) 1575 WP_350245057.1 acyl-CoA carboxylase subunit beta -
  ABOD76_RS11880 (ABOD76_11840) pilT 1330925..1332151 (-) 1227 WP_350245058.1 type IV pilus twitching motility protein PilT Machinery gene
  ABOD76_RS11885 (ABOD76_11845) pilB 1332183..1334849 (-) 2667 WP_350245059.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  ABOD76_RS11890 (ABOD76_11850) - 1334849..1335367 (-) 519 WP_350245060.1 YqeG family HAD IIIA-type phosphatase -
  ABOD76_RS11895 (ABOD76_11855) pgeF 1335364..1336227 (-) 864 WP_350245061.1 peptidoglycan editing factor PgeF -
  ABOD76_RS11900 (ABOD76_11860) - 1336346..1337128 (+) 783 WP_350245062.1 enoyl-ACP reductase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44548.95 Da        Isoelectric Point: 6.8592

>NTDB_id=1010482 ABOD76_RS11880 WP_350245058.1 1330925..1332151(-) (pilT) [Deinococcus sonorensis KR-87]
MQTATDITDILRLAAEKNASDVIVTAGLPPQFKIHGVYTGYDFAELSATDTRKLMYSMMNEKQQRSFEERRELDFSFALG
ERARFRVNTFMQRGSVGGVMRLIPTTIKSVGDLGLPPNVVEIANAPRGLVLVTGPTGSGKSTTLAAMIDYINQNKKMHIM
TIEDPIEFMHPHKNSIVNQREVGSDTMDFQNALRAVLRQAPDVILVGEMRDYETIKAAVTAAETGHLVMGTLHTNSAPES
IDRIVDVFPEEQQEQIRVQLANNLVAVMTQQLLPRMDGGRILAYELLIANPAVRALIREGKTYQITSVMQTGLREGMVTM
DAYLAGLYRRRVISHDTGMERAVDSKEFARLANDPNASAQIPMSTNLSGQGGPDVSSVQPQGVGRPSTGLPASGATLSGM
PAKPYGRG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1010482 ABOD76_RS11880 WP_350245058.1 1330925..1332151(-) (pilT) [Deinococcus sonorensis KR-87]
ATGCAGACTGCCACCGACATCACCGATATCCTGCGCCTCGCCGCCGAGAAGAACGCCTCCGACGTGATCGTGACGGCCGG
ACTGCCGCCGCAGTTCAAGATTCACGGCGTGTACACCGGCTACGATTTCGCCGAGCTCTCGGCCACCGACACCCGCAAGC
TGATGTACAGCATGATGAACGAAAAGCAGCAGCGCAGCTTCGAGGAGCGGCGCGAGCTGGACTTCAGCTTCGCGCTGGGC
GAGCGGGCGCGCTTCCGCGTCAACACCTTCATGCAGCGCGGGTCGGTGGGCGGCGTGATGCGTCTGATTCCCACCACCAT
CAAGTCGGTGGGCGACCTGGGCCTGCCGCCGAACGTGGTGGAGATTGCCAACGCGCCGCGCGGACTGGTGCTGGTGACTG
GCCCCACCGGCTCCGGCAAGAGCACCACGCTGGCCGCCATGATCGACTACATCAACCAGAACAAGAAGATGCACATCATG
ACGATCGAGGACCCGATCGAGTTCATGCATCCGCACAAGAACAGCATCGTGAACCAGCGCGAGGTCGGCTCCGACACCAT
GGACTTCCAGAACGCGCTGCGGGCGGTGCTGCGTCAGGCGCCCGACGTGATCCTGGTGGGCGAGATGCGCGACTACGAGA
CCATCAAGGCGGCCGTGACCGCCGCCGAGACCGGGCACCTGGTGATGGGTACCCTGCACACCAACAGCGCCCCGGAGAGC
ATCGACCGCATCGTGGACGTGTTCCCGGAGGAGCAGCAGGAGCAGATCCGGGTGCAGCTGGCCAACAACCTGGTGGCGGT
CATGACCCAGCAGCTGCTGCCCAGGATGGACGGCGGACGGATTCTGGCGTATGAGCTGCTGATCGCCAACCCGGCGGTGC
GCGCCCTGATCCGCGAGGGCAAGACCTACCAGATCACCTCGGTGATGCAGACCGGGCTGCGCGAGGGCATGGTCACCATG
GACGCCTACCTGGCGGGCCTGTACCGCCGCCGCGTGATCTCGCACGACACCGGCATGGAGCGGGCAGTGGACAGCAAGGA
GTTCGCGCGCCTCGCCAACGACCCGAATGCCAGCGCCCAGATCCCCATGAGCACCAACCTGAGCGGCCAGGGCGGCCCGG
ACGTGTCGTCGGTGCAGCCGCAGGGAGTGGGGCGGCCCTCCACCGGGCTGCCGGCCAGCGGCGCCACCCTCTCGGGCATG
CCCGCCAAGCCCTACGGTCGCGGCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(14-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

80.726

87.745

0.708
  pilT Neisseria meningitidis 8013

51.594

84.559

0.436
  pilT Neisseria gonorrhoeae MS11

50.872

84.314

0.429
  pilT Acinetobacter baumannii strain A118

51.02

84.069

0.429
  pilT Acinetobacter baumannii D1279779

51.02

84.069

0.429
  pilT Pseudomonas stutzeri DSM 10701

51.02

84.069

0.429
  pilT Acinetobacter nosocomialis M2

51.02

84.069

0.429
  pilT Pseudomonas aeruginosa PAK

50.742

82.598

0.419
  pilT Legionella pneumophila strain ERS1305867

49.854

84.069

0.419
  pilT Legionella pneumophila strain Lp02

49.854

84.069

0.419
  pilT Acinetobacter baylyi ADP1

49.563

84.069

0.417
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.695

80.392

0.4
  pilT Vibrio cholerae strain A1552

49.695

80.392

0.4
  pilU Pseudomonas stutzeri DSM 10701

45.481

84.069

0.382
  pilU Acinetobacter baylyi ADP1

43.333

88.235

0.382
  pilU Vibrio cholerae strain A1552

43.881

82.108

0.36

Multiple sequence alignment