Detailed information NTG1010483

Bioinformatically predicted

Overview

• Name: pilB
• Type: Machinery gene
• Locus tag: ABOD76_RS11885
• Genome accession: NZ_CP158299
• Coordinates: 1332183..1334849 (-)
• Length: 888 a.a.
• NCBI ID: WP_350245059.1
• Uniprot ID: A0AAU7UEV9
• Organism: Deinococcus sonorensis KR-87
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1327183..1339849

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABOD76_RS11865 (ABOD76_11825)	-	1327268..1327879 (-)	612	WP_350245054.1	hypothetical protein	-
ABOD76_RS11870 (ABOD76_11830)	-	1327945..1329156 (-)	1212	WP_350245055.1	hypothetical protein	-
ABOD76_RS11875 (ABOD76_11835)	-	1329264..1330838 (-)	1575	WP_350245057.1	acyl-CoA carboxylase subunit beta	-
ABOD76_RS11880 (ABOD76_11840)	pilT	1330925..1332151 (-)	1227	WP_350245058.1	type IV pilus twitching motility protein PilT	Machinery gene
ABOD76_RS11885 (ABOD76_11845)	pilB	1332183..1334849 (-)	2667	WP_350245059.1	ATPase, T2SS/T4P/T4SS family	Machinery gene
ABOD76_RS11890 (ABOD76_11850)	-	1334849..1335367 (-)	519	WP_350245060.1	YqeG family HAD IIIA-type phosphatase	-
ABOD76_RS11895 (ABOD76_11855)	pgeF	1335364..1336227 (-)	864	WP_350245061.1	peptidoglycan editing factor PgeF	-
ABOD76_RS11900 (ABOD76_11860)	-	1336346..1337128 (+)	783	WP_350245062.1	enoyl-ACP reductase	-

Sequence

Protein

• Length: 888 a.a.
• Molecular weight: 96923.74 Da
• Isoelectric Point: 4.9155

>NTDB_id=1010483 ABOD76_RS11885 WP_350245059.1 1332183..1334849(-) (pilB) [Deinococcus sonorensis KR-87]
MALSIGDRRLGAILLEQGYVNDTDLQRALDRHAEVGGRLADILIDGGMVGEKRIARAVEEALGIPLVNLTSVTPDVAALA
CLTAQVAHNALAFPFALEGDTLRVAFVDPLNNLNLETVEDASGLNVELYQALREQVQWAIAANYPELGLNVSAPSDGQDG
TVSLLGQRLINRGLLSELQLKDALQHQKQSGDPLGALLVNMRLITEEQLYETLAEQAGTLFVRNPKDFNPDEEVLGLLLR
ADALRLSAVPVDETAGKVTVIGSDPRRREDIQALMGKPVDLLLARPDDVDTLIERAYPQRGRLGEQMVQQGTLSREQLRE
ALQVQARTGKVKPLGEVIVDLGFAASDEIEAAIQKQNAGGGRLEDTLVQSGKLSPEMLARSLATQLGYEYLDPVQSPPDP
KVALLIPESTARRYVVVPMRLQGDALVVAMKDPRNVFALDDLRLLTGREIQPAVMAEKDIVRLIERYFGSQDMAALNEEL
AKNSRGREKEREAAQDQANLDDNAVVKVVDSIIREAALQEASDIHIEPSETAVRVRYRVDGNLRDHMELPKGSAQSVLAR
IKILGQLDIAERRIPQDGRVRFKKGSIDLDLRLSTLPTLYGEKAVMRLLQKASNIPEVEQLGLSEHNFQRFTDLIEKPNG
IFLITGPTGSGKSFSSFSILKRIARPEKNTTTIEDPVEYEIPGINQSQVNPVAGMTFARALRAFLRQDPDIIFVGEIRDA
ETAKIATEAALTGHLVLATLHTNDAPGAVTRLEEMGVEHFNIGAALIGVLAQRLVRKVCQECRTPTNADPDVLRRLGIGE
RELTGATLYRGAGCPRCGGTGYKGRMGIHELMVIDDPLRRGIGKALSANDLRDIATEQSNMKTLRQDGIEKAMAGITTLE
EVLAVTSA

Nucleotide

• Length: 2667 bp

>NTDB_id=1010483 ABOD76_RS11885 WP_350245059.1 1332183..1334849(-) (pilB) [Deinococcus sonorensis KR-87]
ATGGCGCTTTCGATTGGTGACCGGCGGTTGGGTGCAATCCTGCTTGAACAGGGCTACGTGAACGACACCGACCTGCAACG
GGCCCTGGACCGGCACGCCGAGGTGGGTGGCCGGCTGGCCGACATCCTGATCGACGGCGGCATGGTGGGTGAGAAGCGCA
TCGCGCGGGCGGTGGAGGAAGCGCTGGGCATTCCGCTGGTCAACCTGACGTCCGTCACCCCGGACGTGGCCGCCCTGGCC
TGCCTGACCGCGCAGGTGGCGCACAACGCGCTGGCCTTCCCCTTCGCGCTGGAGGGCGACACCCTGCGGGTGGCCTTCGT
GGACCCGCTCAACAACCTCAACCTGGAAACGGTCGAGGATGCCAGCGGGCTGAACGTGGAGCTGTATCAGGCGCTGCGTG
AGCAGGTGCAGTGGGCCATCGCGGCGAACTACCCGGAACTGGGACTGAACGTTTCGGCGCCGTCCGATGGCCAGGACGGC
ACCGTCTCGCTGCTGGGCCAGCGCCTGATCAACCGTGGGCTGCTGAGCGAACTGCAGCTCAAGGACGCCCTGCAGCACCA
GAAACAGAGTGGCGATCCGCTGGGCGCGCTGCTGGTCAACATGCGGCTCATCACCGAGGAGCAGCTGTACGAGACGCTGG
CCGAGCAGGCCGGCACGCTGTTCGTCCGCAACCCCAAGGACTTCAACCCCGACGAGGAGGTGCTGGGGCTGCTGCTGCGC
GCCGACGCGCTGCGCCTCTCGGCCGTGCCGGTGGACGAGACGGCCGGCAAGGTCACGGTGATCGGCTCGGACCCGCGCCG
CCGCGAGGACATTCAGGCGCTGATGGGCAAGCCGGTGGACCTGCTGCTGGCCCGCCCCGACGACGTGGACACCCTGATCG
AACGCGCCTATCCGCAGCGCGGCCGGCTGGGGGAGCAGATGGTGCAGCAGGGCACGCTGTCGCGCGAACAGCTGCGCGAG
GCGCTGCAGGTGCAGGCCCGCACCGGCAAGGTCAAGCCGCTGGGCGAGGTGATCGTGGACCTGGGCTTCGCGGCCAGCGA
CGAGATTGAGGCCGCGATCCAGAAGCAGAACGCGGGCGGCGGGCGGCTGGAAGACACGCTGGTGCAGTCGGGCAAGCTCA
GCCCCGAGATGCTGGCGCGCTCGCTGGCCACCCAGCTCGGCTACGAGTACCTGGACCCGGTCCAGAGCCCGCCGGACCCC
AAGGTGGCGCTGCTGATTCCCGAAAGCACCGCCCGGCGCTACGTGGTGGTGCCGATGCGGCTGCAGGGCGACGCGCTGGT
CGTGGCCATGAAGGACCCGCGCAACGTGTTCGCGCTGGACGACCTGCGGCTGCTGACCGGCCGCGAGATCCAGCCGGCCG
TGATGGCCGAGAAGGACATCGTCCGGCTGATCGAGCGCTACTTCGGGTCGCAGGACATGGCGGCGCTGAACGAGGAGCTG
GCCAAGAACAGCCGGGGCCGCGAGAAGGAGCGCGAGGCGGCCCAGGATCAGGCCAACCTCGACGACAACGCGGTCGTGAA
GGTGGTGGACAGCATCATCCGTGAGGCGGCGCTGCAGGAGGCCTCGGACATCCACATCGAGCCCAGCGAGACCGCCGTGC
GGGTGCGCTACCGGGTGGACGGCAACCTGCGCGACCACATGGAACTGCCCAAGGGCTCGGCGCAGAGCGTGCTGGCCCGC
ATCAAGATCCTGGGGCAGCTGGACATCGCCGAGCGGCGCATTCCGCAGGACGGACGCGTGCGCTTCAAGAAGGGCAGCAT
CGACCTGGACCTGCGTCTCTCGACCCTGCCGACCCTCTACGGCGAGAAGGCCGTGATGCGTCTGCTGCAGAAGGCCAGCA
ACATTCCGGAAGTGGAGCAGCTGGGCCTCAGCGAGCACAACTTCCAGCGCTTCACCGATCTGATCGAGAAACCGAACGGC
ATCTTCCTGATCACCGGCCCCACCGGCTCCGGCAAGTCGTTCAGCAGCTTCTCGATCCTGAAGCGCATCGCCCGGCCCGA
GAAGAACACCACCACCATCGAGGACCCGGTGGAGTACGAGATTCCCGGCATCAACCAGTCGCAGGTGAACCCGGTGGCCG
GCATGACCTTCGCCCGCGCCCTGCGCGCCTTCCTGCGACAGGACCCGGACATCATCTTCGTGGGCGAGATCCGCGACGCC
GAGACCGCCAAGATCGCCACCGAGGCGGCCCTGACCGGCCACCTGGTGCTGGCCACCCTGCACACCAACGACGCCCCCGG
CGCGGTCACGCGTCTGGAGGAGATGGGCGTGGAGCACTTCAACATCGGCGCGGCGCTGATCGGGGTGCTGGCGCAGCGGC
TGGTGCGCAAGGTGTGTCAGGAGTGCAGGACGCCCACCAACGCCGACCCGGACGTGCTGCGCCGGCTGGGCATCGGGGAG
CGCGAGCTGACCGGGGCCACGCTGTACCGCGGCGCCGGCTGCCCGCGCTGCGGCGGCACCGGCTACAAGGGCCGCATGGG
CATCCACGAGCTGATGGTCATCGACGACCCGCTGCGGCGCGGCATCGGCAAGGCCCTTTCGGCCAACGACCTGCGCGACA
TCGCCACCGAACAGAGCAACATGAAAACGCTGCGCCAGGACGGCATCGAGAAGGCCATGGCCGGCATCACCACCCTGGAA
GAAGTGCTGGCCGTCACCAGCGCCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (512-777)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (43-145)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (367-472)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (198-301)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilB	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	72.472	100	0.726
pilF	Thermus thermophilus HB27	56.999	100	0.573