Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   QUE41_RS03190 Genome accession   NZ_AP027368
Coordinates   667195..668226 (+) Length   343 a.a.
NCBI ID   WP_286341508.1    Uniprot ID   -
Organism   Ferrimonas sp. YFM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 662195..673226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE41_RS03155 (F0521_05910) hemW 662488..663630 (-) 1143 WP_286342897.1 radical SAM family heme chaperone HemW -
  QUE41_RS03160 (F0521_05920) rdgB 663633..664229 (-) 597 WP_286341503.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  QUE41_RS03165 (F0521_05930) - 664293..664730 (-) 438 WP_286341504.1 DUF4426 domain-containing protein -
  QUE41_RS03170 (F0521_05940) yggU 664794..665081 (-) 288 WP_286341505.1 DUF167 family protein YggU -
  QUE41_RS03175 (F0521_05950) - 665078..665626 (-) 549 WP_286341506.1 YggT family protein -
  QUE41_RS03180 (F0521_05960) proC 665653..666471 (-) 819 WP_286342898.1 pyrroline-5-carboxylate reductase -
  QUE41_RS03185 (F0521_05970) - 666483..667166 (-) 684 WP_286341507.1 YggS family pyridoxal phosphate-dependent enzyme -
  QUE41_RS03190 (F0521_05980) pilT 667195..668226 (+) 1032 WP_286341508.1 type IV pilus twitching motility protein PilT Machinery gene
  QUE41_RS03195 (F0521_05990) pilU 668235..669350 (+) 1116 WP_286341509.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  QUE41_RS03200 (F0521_06000) - 669374..670021 (+) 648 WP_286341510.1 TetR/AcrR family transcriptional regulator -
  QUE41_RS03205 (F0521_06010) - 670207..672468 (+) 2262 WP_286341511.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 38067.68 Da        Isoelectric Point: 6.5062

>NTDB_id=100895 QUE41_RS03190 WP_286341508.1 667195..668226(+) (pilT) [Ferrimonas sp. YFM]
MDITELLAFSVKHNASDLHLSSGVAPLIRVDGEVRRLSVPELDHATIQALVYDIMNDKQRKEYEEKLEIDFSFEVPDLAR
FRVNAFHQSRGAAAVFRTIPSEVLTLEQLEAPDIFRQIASFPRGLVLVTGPTGSGKSTTLAAMVDYINAERRDHILTIED
PIEFVHKPKNCLINQREVHRDTHSFNNALRSALREDPDVILVGELRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPAAEKDMVRTMLSESLQAVISQTLVKKVGGGRVAAHEIMMGTPAIRNLIREDKVAQMYSAIQTGMSHGMQTLEQSL
TKLASQGLISRQDMLSKLNKPSL

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=100895 QUE41_RS03190 WP_286341508.1 667195..668226(+) (pilT) [Ferrimonas sp. YFM]
ATGGATATTACTGAGCTTCTTGCTTTTAGTGTAAAACACAACGCCTCCGATCTGCACCTATCTTCCGGTGTGGCCCCTCT
TATTCGAGTCGATGGTGAGGTTCGCCGCCTGAGTGTTCCTGAACTGGATCACGCCACCATACAGGCGCTTGTCTACGACA
TCATGAATGACAAGCAGCGTAAGGAGTATGAGGAGAAGCTGGAGATCGATTTCTCTTTCGAGGTGCCGGATCTGGCCCGC
TTCAGGGTCAACGCCTTCCACCAGTCAAGGGGAGCTGCGGCGGTATTTCGTACCATTCCCAGCGAAGTGCTGACCCTGGA
GCAGCTGGAAGCTCCAGACATCTTCCGCCAGATCGCCTCCTTTCCTAGGGGACTGGTGCTGGTGACCGGCCCTACCGGAT
CGGGCAAGAGCACCACCCTGGCTGCCATGGTGGATTACATCAATGCAGAGCGCCGGGACCATATCCTGACCATCGAGGAT
CCCATAGAGTTTGTTCACAAGCCGAAGAACTGCCTGATTAACCAGAGGGAAGTGCACCGGGATACCCACAGCTTCAACAA
TGCCCTGCGCAGTGCCCTGCGTGAGGACCCCGACGTGATCCTTGTGGGGGAACTCAGGGACCTGGAAACCATCCGTCTGG
CCCTGACGGCGGCGGAAACCGGTCACCTGGTGTTCGGCACCCTGCACACTACCTCGGCGGCCAAGACCATCGATCGGGTT
GTGGATGTGTTCCCGGCGGCGGAGAAGGATATGGTGCGCACCATGTTGTCTGAATCCCTGCAGGCGGTGATCTCCCAGAC
CCTGGTGAAAAAGGTGGGCGGAGGCCGGGTGGCGGCCCATGAGATCATGATGGGGACACCGGCCATCCGTAATCTGATCC
GTGAGGACAAGGTGGCGCAGATGTACTCCGCCATACAGACCGGCATGAGCCATGGCATGCAGACACTGGAGCAGAGCCTG
ACCAAGCTGGCGAGTCAGGGGCTGATCAGCCGTCAGGATATGCTGTCCAAGCTGAATAAGCCTTCTCTCTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

78.006

99.417

0.776
  pilT Acinetobacter baumannii D1279779

77.713

99.417

0.773
  pilT Acinetobacter baumannii strain A118

77.713

99.417

0.773
  pilT Pseudomonas stutzeri DSM 10701

76.833

99.417

0.764
  pilT Acinetobacter baylyi ADP1

79.394

96.21

0.764
  pilT Pseudomonas aeruginosa PAK

75.66

99.417

0.752
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

73.669

98.542

0.726
  pilT Vibrio cholerae strain A1552

73.669

98.542

0.726
  pilT Legionella pneumophila strain Lp02

72.59

96.793

0.703
  pilT Legionella pneumophila strain ERS1305867

72.59

96.793

0.703
  pilT Neisseria meningitidis 8013

68.278

96.501

0.659
  pilT Neisseria gonorrhoeae MS11

67.976

96.501

0.656
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50

99.708

0.499
  pilU Vibrio cholerae strain A1552

41.667

97.959

0.408
  pilU Acinetobacter baylyi ADP1

39.826

100

0.399
  pilU Pseudomonas stutzeri DSM 10701

40.774

97.959

0.399

Multiple sequence alignment