Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ABNP46_RS18350 Genome accession   NZ_CP157875
Coordinates   3982639..3983673 (+) Length   344 a.a.
NCBI ID   WP_349919719.1    Uniprot ID   -
Organism   Aeromonas veronii strain Ichip_C_3-7     
Function   mediate the depolymerization of the type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3977639..3988673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP46_RS18310 (ABNP46_18290) - 3977695..3978069 (+) 375 WP_349919707.1 YacL family protein -
  ABNP46_RS18315 (ABNP46_18295) - 3978121..3978411 (+) 291 WP_349919708.1 hypothetical protein -
  ABNP46_RS18320 (ABNP46_18300) - 3978637..3979467 (+) 831 WP_349919710.1 CPBP family intramembrane glutamic endopeptidase -
  ABNP46_RS18325 (ABNP46_18305) - 3979544..3979963 (-) 420 WP_349919711.1 DUF4426 domain-containing protein -
  ABNP46_RS18330 (ABNP46_18310) yggU 3979968..3980276 (-) 309 WP_349919713.1 DUF167 family protein YggU -
  ABNP46_RS18335 (ABNP46_18315) - 3980276..3980827 (-) 552 WP_349919714.1 YggT family protein -
  ABNP46_RS18340 (ABNP46_18320) proC 3980853..3981677 (-) 825 WP_349919715.1 pyrroline-5-carboxylate reductase -
  ABNP46_RS18345 (ABNP46_18325) - 3981880..3982599 (-) 720 WP_349919717.1 YggS family pyridoxal phosphate-dependent enzyme -
  ABNP46_RS18350 (ABNP46_18330) pilT 3982639..3983673 (+) 1035 WP_349919719.1 type IVa pilus ATPase TapT Machinery gene
  ABNP46_RS18355 (ABNP46_18335) pilU 3983700..3984809 (+) 1110 WP_349919721.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ABNP46_RS18360 (ABNP46_18340) yaaA 3984843..3985616 (+) 774 WP_349919723.1 peroxide stress protein YaaA -
  ABNP46_RS18365 (ABNP46_18345) srmB 3985798..3987021 (-) 1224 WP_349919724.1 ATP-dependent RNA helicase SrmB -
  ABNP46_RS18370 (ABNP46_18350) - 3987149..3987859 (+) 711 WP_349919726.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38146.85 Da        Isoelectric Point: 6.6957

>NTDB_id=1008763 ABNP46_RS18350 WP_349919719.1 3982639..3983673(+) (pilT) [Aeromonas veronii strain Ichip_C_3-7]
MDITELLAFSVKHKASDLHLSAGVPPMIRVDGEVRKINLPALDHREVHALIYDIMNDHQRKELEENFEVDFSFEVPGMAR
FRVNAFQQSRGSGAVFRTIPSQVMSLEDLGAPEMFRKIAEFPRGLVLVTGPTGSGKSTTLAAMVDYINDNTHQHILTIED
PIEFVHENKRCLVNQREVHRDTKSFTNALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPGAEKDMVRSMLSESLRAVISQTLLKRIGGGRVAAHEIMLGIPAVRNLIREDKVAQLYSVIQTGMTHGMQTMDQSL
KQLVNRGVVAALDAKAKAADPNNI

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1008763 ABNP46_RS18350 WP_349919719.1 3982639..3983673(+) (pilT) [Aeromonas veronii strain Ichip_C_3-7]
ATGGATATCACAGAGTTATTGGCTTTTAGTGTAAAGCATAAGGCCTCGGATCTACACCTCTCGGCCGGGGTTCCTCCGAT
GATCAGGGTTGATGGGGAGGTTCGCAAGATCAATTTGCCCGCCCTGGACCACAGGGAAGTACACGCCCTCATCTATGACA
TCATGAATGACCACCAGCGCAAGGAGCTGGAGGAGAACTTCGAGGTGGACTTCTCCTTCGAGGTGCCCGGCATGGCGCGC
TTCCGGGTCAACGCCTTCCAGCAATCCCGTGGCTCGGGCGCCGTGTTCCGGACCATTCCAAGCCAGGTCATGAGCCTCGA
GGATCTGGGGGCACCGGAGATGTTTCGCAAGATAGCCGAGTTCCCCCGCGGGCTGGTGCTGGTCACGGGGCCGACCGGCT
CGGGCAAGTCCACCACCCTGGCGGCCATGGTCGACTACATCAATGACAACACTCACCAGCACATCCTCACCATCGAGGAT
CCCATCGAATTCGTGCACGAGAACAAACGCTGCCTGGTCAACCAGCGCGAAGTCCATCGCGACACCAAGAGCTTCACCAA
CGCCCTGCGCTCGGCCCTGCGGGAAGACCCCGACATCATACTGGTGGGGGAAATGCGGGACCTCGAAACCATACGCCTGG
CCCTGACCGCCGCCGAGACCGGCCACCTGGTGTTTGGCACCCTGCACACCTCGTCAGCGGCCAAGACCATCGACCGTATC
ATCGACGTCTTCCCGGGCGCAGAGAAGGACATGGTGCGCTCCATGCTCTCCGAATCCCTGCGAGCCGTCATCTCCCAGAC
CCTGCTCAAGCGGATCGGCGGCGGCCGGGTGGCGGCCCACGAGATCATGCTGGGGATCCCGGCGGTGCGAAACCTCATCC
GGGAAGACAAGGTGGCCCAGCTCTACTCTGTCATCCAGACCGGGATGACCCACGGCATGCAGACCATGGATCAGAGCCTC
AAGCAGCTCGTCAACCGTGGCGTCGTGGCCGCGCTGGATGCCAAGGCCAAGGCGGCCGATCCCAACAACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baylyi ADP1

77.616

100

0.776
  pilT Pseudomonas stutzeri DSM 10701

77.326

100

0.773
  pilT Acinetobacter baumannii D1279779

76.453

100

0.765
  pilT Acinetobacter baumannii strain A118

76.453

100

0.765
  pilT Acinetobacter nosocomialis M2

76.453

100

0.765
  pilT Pseudomonas aeruginosa PAK

75.872

100

0.759
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

75.668

97.965

0.741
  pilT Vibrio cholerae strain A1552

75.668

97.965

0.741
  pilT Legionella pneumophila strain Lp02

73.333

95.93

0.703
  pilT Legionella pneumophila strain ERS1305867

73.333

95.93

0.703
  pilT Neisseria meningitidis 8013

68.622

99.128

0.68
  pilT Neisseria gonorrhoeae MS11

68.328

99.128

0.677
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.339

99.419

0.52
  pilU Vibrio cholerae strain A1552

42.899

100

0.43
  pilU Pseudomonas stutzeri DSM 10701

41.159

100

0.413
  pilU Acinetobacter baylyi ADP1

40.751

100

0.41

Multiple sequence alignment