Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ABLB99_RS13985 Genome accession   NZ_CP157447
Coordinates   2938650..2939687 (+) Length   345 a.a.
NCBI ID   WP_006581387.1    Uniprot ID   A0A0A7XL61
Organism   Acinetobacter nosocomialis strain XH1727     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2933650..2944687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB99_RS13975 (ABLB99_13970) - 2936881..2937723 (-) 843 WP_139887705.1 undecaprenyl-diphosphate phosphatase -
  ABLB99_RS13980 (ABLB99_13975) - 2937831..2938523 (-) 693 WP_032010894.1 YggS family pyridoxal phosphate-dependent enzyme -
  ABLB99_RS13985 (ABLB99_13980) pilT 2938650..2939687 (+) 1038 WP_006581387.1 type IV pilus twitching motility protein PilT Machinery gene
  ABLB99_RS13990 (ABLB99_13985) pilU 2939715..2940833 (+) 1119 WP_139887707.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ABLB99_RS13995 (ABLB99_13990) fur 2940904..2941341 (-) 438 WP_002052029.1 ferric iron uptake transcriptional regulator -
  ABLB99_RS14000 (ABLB99_13995) - 2941453..2941851 (+) 399 WP_001170994.1 outer membrane protein assembly factor BamE -
  ABLB99_RS14005 (ABLB99_14000) - 2941907..2942230 (-) 324 WP_002052062.1 RnfH family protein -
  ABLB99_RS14010 (ABLB99_14005) - 2942230..2943297 (-) 1068 WP_004710227.1 hypothetical protein -
  ABLB99_RS14015 (ABLB99_14010) - 2943450..2943905 (-) 456 WP_000782976.1 bacteriohemerythrin -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38328.92 Da        Isoelectric Point: 6.7271

>NTDB_id=1006935 ABLB99_RS13985 WP_006581387.1 2938650..2939687(+) (pilT) [Acinetobacter nosocomialis strain XH1727]
MDITELLAFSVKNGASDLHLSAGMPPMIRVDGEVRRINLPALEHKDVHRLVYDIMNDKQRRDYEEKLETDFSFEVPNVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGLGQIFKDICDYPRGIVLVTGPTGSGKSTTLAAMLDYINENRYDHILTVED
PIEFVHQSKKCLINQREVHRDTHGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
IDVFPAEEKDMVRAMLSESLQAVISQTLLKKNGGGRVAAHEIMIGIPAIRNLIRENKVAQMYSAIQTGANHGMTTLDQSL
KGLVSRGVISPQTARTAAKQPESFL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1006935 ABLB99_RS13985 WP_006581387.1 2938650..2939687(+) (pilT) [Acinetobacter nosocomialis strain XH1727]
ATGGATATTACAGAGCTACTCGCCTTCTCTGTGAAAAATGGCGCATCCGATTTGCACTTATCAGCTGGTATGCCACCAAT
GATTCGTGTCGATGGTGAAGTTCGTCGTATTAACTTGCCAGCCTTAGAACATAAAGATGTCCACCGCCTCGTTTATGACA
TCATGAATGATAAACAGCGCCGTGACTATGAAGAAAAACTCGAAACTGACTTTTCTTTTGAAGTACCGAATGTTGCACGT
TTCCGTGTGAACGCATTTAACCAAAACCGTGGTGCTGGTGCAGTATTTCGTACCATTCCATCTAAAGTCCTCACCATGGA
AGATCTAGGTCTAGGGCAAATCTTTAAAGATATTTGCGACTATCCTCGCGGTATTGTACTGGTCACAGGACCAACAGGTT
CGGGTAAATCAACTACGCTTGCAGCAATGCTCGATTATATTAATGAAAACCGCTATGACCATATTTTAACGGTGGAAGAC
CCAATCGAATTTGTACATCAGTCCAAGAAATGTCTGATTAACCAGCGTGAAGTGCATCGTGATACACATGGCTTTAATGA
AGCCCTTCGCTCAGCACTACGTGAAGACCCAGATATTATTTTAGTCGGTGAGATGCGTGACCTTGAAACGATTCGATTAG
CACTTACTGCTGCCGAAACAGGTCACTTGGTATTTGGTACGCTTCACACCACATCGGCTGCAAAAACCATTGACCGTGTG
ATTGACGTATTCCCTGCCGAAGAAAAAGACATGGTTCGTGCCATGCTGTCTGAATCTTTACAAGCAGTTATTTCTCAGAC
CCTGCTTAAAAAGAATGGTGGTGGTCGTGTTGCGGCACATGAAATTATGATTGGTATTCCGGCTATTCGTAACTTAATTC
GTGAAAACAAAGTCGCACAAATGTATTCAGCTATTCAGACTGGTGCTAACCATGGCATGACAACCCTCGATCAAAGCCTG
AAAGGTTTGGTGTCACGTGGTGTAATTAGTCCACAAACAGCCCGTACAGCGGCGAAACAGCCTGAATCATTCCTATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7XL61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

100

100

1
  pilT Acinetobacter baumannii D1279779

99.71

100

0.997
  pilT Acinetobacter baumannii strain A118

99.71

100

0.997
  pilT Acinetobacter baylyi ADP1

88.663

99.71

0.884
  pilT Pseudomonas aeruginosa PAK

84.012

99.71

0.838
  pilT Pseudomonas stutzeri DSM 10701

83.721

99.71

0.835
  pilT Legionella pneumophila strain Lp02

75.581

99.71

0.754
  pilT Legionella pneumophila strain ERS1305867

75.581

99.71

0.754
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.429

97.391

0.696
  pilT Vibrio cholerae strain A1552

71.429

97.391

0.696
  pilT Neisseria meningitidis 8013

68.116

100

0.681
  pilT Neisseria gonorrhoeae MS11

67.826

100

0.678
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.174

100

0.522
  pilU Vibrio cholerae strain A1552

41.593

98.261

0.409
  pilU Pseudomonas stutzeri DSM 10701

40.597

97.101

0.394
  pilU Acinetobacter baylyi ADP1

38.728

100

0.388

Multiple sequence alignment