Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   FGK95_RS01940 Genome accession   NZ_LR590625
Coordinates   363210..363698 (+) Length   162 a.a.
NCBI ID   WP_039994770.1    Uniprot ID   -
Organism   Streptococcus canis strain B700072     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 358210..368698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK95_RS01940 (SAMEA5186854_00385) comX/sigX/comX2/sigX2 363210..363698 (+) 489 WP_039994770.1 hypothetical protein Regulator
  FGK95_RS01950 (SAMEA5186854_00388) - 365063..365724 (-) 662 Protein_323 IS30 family transposase -
  FGK95_RS01955 (SAMEA5186854_00389) - 365927..366454 (+) 528 WP_093998477.1 YqeG family HAD IIIA-type phosphatase -
  FGK95_RS01960 (SAMEA5186854_00390) yqeH 366454..367572 (+) 1119 WP_093998476.1 ribosome biogenesis GTPase YqeH -
  FGK95_RS01965 (SAMEA5186854_00391) yhbY 367599..367907 (+) 309 WP_003046702.1 ribosome assembly RNA-binding protein YhbY -
  FGK95_RS01970 (SAMEA5186854_00392) - 367986..368618 (+) 633 WP_003046705.1 nicotinate-nucleotide adenylyltransferase -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 19678.57 Da        Isoelectric Point: 5.7359

>NTDB_id=1004812 FGK95_RS01940 WP_039994770.1 363210..363698(+) (comX/sigX/comX2/sigX2) [Streptococcus canis strain B700072]
MDMSIETEVVFEKVKPIILKLKRHYYIQLWEREDWLQEGYLILVSLLEQHPELLWEDERLYRYFKTKFSSYLKDVLRQQE
SQKRQFHKMAYEEIGDVAHAIPSGGLWLDDYVAYREVVEVLEGQLGEEERLQFQALVRGERFKGRQALLRKLRPYFEGFE
RS

Nucleotide


Download         Length: 489 bp        

>NTDB_id=1004812 FGK95_RS01940 WP_039994770.1 363210..363698(+) (comX/sigX/comX2/sigX2) [Streptococcus canis strain B700072]
ATGGACATGTCGATAGAGACAGAAGTAGTGTTTGAGAAGGTGAAACCCATTATCTTGAAGTTGAAGCGTCATTATTATAT
TCAATTGTGGGAGAGAGAGGATTGGTTACAGGAAGGGTATTTGATATTGGTGAGTCTTCTAGAGCAGCATCCTGAATTAC
TTTGGGAAGACGAACGGTTGTATCGTTATTTTAAGACTAAGTTTTCATCGTATTTGAAGGATGTCTTGCGTCAGCAAGAA
AGTCAGAAGCGTCAGTTTCATAAAATGGCTTATGAGGAGATAGGTGATGTAGCACATGCGATTCCATCAGGTGGGTTATG
GTTGGATGATTACGTGGCCTACAGGGAGGTGGTTGAGGTGTTAGAAGGGCAGTTGGGTGAAGAGGAGCGGTTACAGTTTC
AGGCCTTGGTGAGAGGGGAACGGTTTAAGGGAAGGCAGGCCTTGCTTAGGAAGTTGCGTCCTTATTTTGAGGGATTTGAG
AGAAGTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

77.987

98.148

0.765
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

77.987

98.148

0.765
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

77.358

98.148

0.759
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

77.358

98.148

0.759
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

76.73

98.148

0.753
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

76.73

98.148

0.753
  comX/sigX Streptococcus mutans UA159

51.899

97.531

0.506
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

48.077

96.296

0.463
  comX Streptococcus sobrinus strain NIDR 6715-7

42.857

99.383

0.426
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

41.667

96.296

0.401
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

41.667

96.296

0.401
  comX Streptococcus thermophilus LMD-9

43.046

93.21

0.401
  comX Streptococcus thermophilus LMG 18311

43.046

93.21

0.401
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

41.722

93.21

0.389
  comX/sigX Streptococcus salivarius strain HSISS4

41.06

93.21

0.383
  comX Streptococcus salivarius SK126

41.06

93.21

0.383
  comX/comX2 Streptococcus pneumoniae TIGR4

41.333

92.593

0.383
  comX/comX1 Streptococcus pneumoniae TIGR4

41.333

92.593

0.383
  comX/comX2 Streptococcus pneumoniae Rx1

41.333

92.593

0.383
  comX/comX1 Streptococcus pneumoniae Rx1

41.333

92.593

0.383
  comX/comX2 Streptococcus pneumoniae D39

41.333

92.593

0.383
  comX/comX1 Streptococcus pneumoniae D39

41.333

92.593

0.383
  comX/comX2 Streptococcus pneumoniae R6

41.333

92.593

0.383
  comX/comX1 Streptococcus pneumoniae R6

41.333

92.593

0.383
  comX/sigX Streptococcus suis D9

39.355

95.679

0.377
  comX/sigX Streptococcus suis isolate S10

39.355

95.679

0.377
  comX/sigX Streptococcus suis P1/7

39.355

95.679

0.377
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

40.397

93.21

0.377
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

40.397

93.21

0.377