Detailed information of T6SS

Note: only experimentally validated proteins are displayed in the graph.


Summary

T6SS ID T6SS01299 insolico
T6SS type Type i1
Strain Pseudomonas sp. JY-Q
Replicon (RefSeq) chromosome (NZ_CP011525)
Location 4074391..4091510
Function -
Comment -
References
[1] Li J, Xie L, Qian S, Tang Y, Shen M, Li S, Wang J, Xiong L, Lu J, Zhong W. et al (2021) A Type VI Secretion System Facilitates Fitness, Homeostasis, and Competitive Advantages for Environmental Adaptability and Efficient Nicotine Biodegradation.. Appl Environ Microbiol. 87(9). [PudMed:33608299]
insolico Bioinformatics investigation has been performed.

T6SS components and genome coordinates

ComponentFHATagOTssATssBTssCTssDTssETssFTssGTssITssJTssKTssLTssM
Number11111111111111


Component ID Component Locus tag (Gene) Coordinate Strand Size (bp) NCBI ID Product
AA098_RS18480 4071479..4072144 - 666 WP_177342697.1 LexA family transcriptional regulator
AA098_RS18485 4072210..4072863 - 654 WP_003251326.1 helix-turn-helix domain-containing protein
AA098_RS18490 4072994..4073293 + 300 WP_003251328.1 hypothetical protein
AA098_RS18495 4073742..4074257 + 516 WP_003251330.1 DUF4880 domain-containing protein
T6CP016208 TssM AA098_RS18500 (tssM) 4074391..4078017 - 3627 WP_064614880.1 type VI secretion system membrane subunit TssM
T6CP016209 TssA AA098_RS18505 (tssA) 4078014..4079480 - 1467 WP_064614881.1 type VI secretion system protein TssA
T6CP016210 TagO AA098_RS18510 (tagO) 4079468..4080100 - 633 WP_004576458.1 type VI secretion system-associated protein TagO
T6CP016211 TssB AA098_RS18515 (tssB) 4080375..4080878 + 504 WP_004576457.1 type VI secretion system contractile sheath small subunit
T6CP016212 TssC AA098_RS18520 (tssC) 4080896..4082383 + 1488 WP_064614883.1 type VI secretion system contractile sheath large subunit
T6CP016213 TssE AA098_RS18525 (tssE) 4082380..4082790 + 411 WP_064614885.1 type VI secretion system baseplate subunit TssE
T6CP016214 TssF AA098_RS18530 (tssF) 4082794..4084560 + 1767 WP_064614887.1 type VI secretion system baseplate subunit TssF
T6CP016215 TssG AA098_RS18535 (tssG) 4084524..4085540 + 1017 WP_064614889.1 type VI secretion system baseplate subunit TssG
T6CP016216 FHA AA098_RS18540 4085537..4085749 + 213 WP_003251348.1 hypothetical protein
T6CP016217 TssJ AA098_RS18545 (tssJ) 4085746..4086543 + 798 WP_064614891.1 type VI secretion system lipoprotein TssJ
T6CP016218 TssK AA098_RS18550 (tssK) 4086593..4087930 + 1338 WP_003251351.1 type VI secretion system baseplate subunit TssK
T6CP016219 TssL AA098_RS18555 4087932..4088801 + 870 WP_064614894.1 type IVB secretion system protein IcmH/DotU
T6CP016220 TssD AA098_RS18560 4088935..4089450 + 516 WP_010954872.1 Hcp family type VI secretion system effector
T6CP016221 TssI AA098_RS18565 (tssI) 4089525..4091510 + 1986 WP_064614896.1 type VI secretion system tip protein VgrG
AA098_RS18570 4091557..4091988 + 432 WP_003251359.1 DUF1795 domain-containing protein
AA098_RS18575 4092042..4096262 + 4221 pseudogene PAAR domain-containing protein
flank Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files

    

Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Regulator ID Locus tag (Gene) Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Effector ID Locus tag (Gene) Classification Cognate immunity protein Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Immunity protein ID Locus tag (Gene) Cognate effector Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
Accessory protein ID Locus tag (Gene) Type             Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Related structure protein Related effector