Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01299  |
| T6SS type | Type i1 |
| Strain | Pseudomonas sp. JY-Q |
| Replicon (RefSeq) | chromosome (NZ_CP011525) |
| Location | 4074391..4091510 |
| Function | - |
| Comment | - |
| References | [1] Li J, Xie L, Qian S, Tang Y, Shen M, Li S, Wang J, Xiong L, Lu J, Zhong W. et al (2021) A Type VI Secretion System Facilitates Fitness, Homeostasis, and Competitive Advantages for Environmental Adaptability and Efficient Nicotine Biodegradation.. Appl Environ Microbiol. 87(9). [PudMed:33608299] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | FHA | TagO | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| AA098_RS18480 | 4071479..4072144 | - | 666 | WP_177342697.1 | LexA family transcriptional regulator | ||
| AA098_RS18485 | 4072210..4072863 | - | 654 | WP_003251326.1 | helix-turn-helix domain-containing protein | ||
| AA098_RS18490 | 4072994..4073293 | + | 300 | WP_003251328.1 | hypothetical protein | ||
| AA098_RS18495 | 4073742..4074257 | + | 516 | WP_003251330.1 | DUF4880 domain-containing protein | ||
| T6CP016208 | TssM | AA098_RS18500 (tssM) | 4074391..4078017 | - | 3627 | WP_064614880.1 | type VI secretion system membrane subunit TssM |
| T6CP016209 | TssA | AA098_RS18505 (tssA) | 4078014..4079480 | - | 1467 | WP_064614881.1 | type VI secretion system protein TssA |
| T6CP016210 | TagO | AA098_RS18510 (tagO) | 4079468..4080100 | - | 633 | WP_004576458.1 | type VI secretion system-associated protein TagO |
| T6CP016211 | TssB | AA098_RS18515 (tssB) | 4080375..4080878 | + | 504 | WP_004576457.1 | type VI secretion system contractile sheath small subunit |
| T6CP016212 | TssC | AA098_RS18520 (tssC) | 4080896..4082383 | + | 1488 | WP_064614883.1 | type VI secretion system contractile sheath large subunit |
| T6CP016213 | TssE | AA098_RS18525 (tssE) | 4082380..4082790 | + | 411 | WP_064614885.1 | type VI secretion system baseplate subunit TssE |
| T6CP016214 | TssF | AA098_RS18530 (tssF) | 4082794..4084560 | + | 1767 | WP_064614887.1 | type VI secretion system baseplate subunit TssF |
| T6CP016215 | TssG | AA098_RS18535 (tssG) | 4084524..4085540 | + | 1017 | WP_064614889.1 | type VI secretion system baseplate subunit TssG |
| T6CP016216 | FHA | AA098_RS18540 | 4085537..4085749 | + | 213 | WP_003251348.1 | hypothetical protein |
| T6CP016217 | TssJ | AA098_RS18545 (tssJ) | 4085746..4086543 | + | 798 | WP_064614891.1 | type VI secretion system lipoprotein TssJ |
| T6CP016218 | TssK | AA098_RS18550 (tssK) | 4086593..4087930 | + | 1338 | WP_003251351.1 | type VI secretion system baseplate subunit TssK |
| T6CP016219 | TssL | AA098_RS18555 | 4087932..4088801 | + | 870 | WP_064614894.1 | type IVB secretion system protein IcmH/DotU |
| T6CP016220 | TssD | AA098_RS18560 | 4088935..4089450 | + | 516 | WP_010954872.1 | Hcp family type VI secretion system effector |
| T6CP016221 | TssI | AA098_RS18565 (tssI) | 4089525..4091510 | + | 1986 | WP_064614896.1 | type VI secretion system tip protein VgrG |
| AA098_RS18570 | 4091557..4091988 | + | 432 | WP_003251359.1 | DUF1795 domain-containing protein | ||
| AA098_RS18575 | 4092042..4096262 | + | 4221 | pseudogene | PAAR domain-containing protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|