Detailed information of component protein


Summary

Component ID T6CP016208
Component protein type TssM
T6SS ID (Type) T6SS01299 insolico (Type i1)
Strain Pseudomonas sp. JY-Q
Replicon chromosome
Sequence Protein sequence (1209 a.a.); Nucleotide sequence (3627 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) AA098_RS18500
Coordinate (Strand) 4074391..4078017 (-)
NCBI ID WP_064614880.1
RefSeq NZ_CP011525
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related PF06761.14 3.4e-70 527..831
IcmF-related_N PF14331.8 2.6e-63 220..475
IcmF_C PF06744.14 6.7e-23 1066..1170
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-18 MNQLWKYLKRWGWPLMTR
Transmembrane helix 19-41 IGLAMPLLLGLGAVLMLVAIWWL
Outside 42-55 GPQWTWRDQQPLAS
Transmembrane helix 56-78 VAHRSVASLVFVLVALLCWLIVL
Inside 79-469 RTRFRRLQAERQQAMAAEVDPAQPFVHAQEKALSQALARYLDNAGGRRALYRLPWYLVLGARQAGKSSFIDCTDQSFSLTRIDKAQARGRPAQALAYPVGWWISNDAVIIDPPGAFISQTGLVDSLGSGSTDVESSVPSGTQAKLWQHLLDWLQRNRSQRALNGLVLVVDLPALLHGTVEQRTALAHLLRTRLYEASSQLGSRLPLYVVLSKFDLLDGFDPFYSKLSADKRNSLFGFTFKLDAVDTFDAWLGEYGEHYDRLLEQLFEQVIDHLDVQGSPGLRSRLYSLHRQLLGLRPILLSFLRETLASDRFTTPALVRGVYWSSVVQHGDVRNAFVREAAQPYKTSLPLLEGKPQAKALAYFIQQAFGRVIYKEAGLAGDNVRVARRKRQ
Transmembrane helix 470-489 LLWVGASVGVLAFCVAIASW
Outside 490-1208 HRYFDINGVKAASVLAKSREYSHHEVDQRLDPTGRNLLAPLDQIRDAVAVFGDYRAAWPGVADLGLYQGRAIGPTVDEAYLSLLSRRFLPALASGVIDTMDAAPPGSEQQMAALRVYRMLEDRRNRRAEWVEEWMARQWQQAFPGQGQLQRDLMRHLKYALAYSDTDLPQYRQRVSDVQQTLRKVPLPQRVYAGLKQQAQEQLHTGLDLRHQVGPAFDVVYQPSSGSSQGDNGVLLAAMLTAKGFKEYFEPRSQRFTEMAMIDQWALGERAQLDYSDADQAALNERLRNLYSADYIDSWRRALNAFSVADFRDLDHGVTILEQLAGPAAPVHRLLETVRDNSSLSSPVNVGVADEAPSLVSVNSKPEQQHALAIQRAFAGLSAMLHAAGEKPSYYDEMHAAIAAVHDYAKAVQGSPDRGKAALHAVHQRFSMTGHDPIGTLQRIATGLPEPINHHVRKVAEQTAQVLNVEALRELERRWDAEVYSFFQQRLAERYPFVVRAPDASLEDFEAFFGPKGRLQHFQDQYLKLFLKDNLEALQAGLQGRSLIRPDVIEQLALADRIRETFFDQRGNLSVQFSIEPLGLSANQRTSLLDLDGQLISYTHGPSQITGIVWPNTLGQHVRSNLTLLRQNGNSSSLEYRGPWSMFRLLSRGSLNGRTATSVDLSFRTGDGVMHYRLNAEKAFNPITQQPFKGFRLPRGLLQQPARVALVEQADVPVM


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9926 - -


  Protein sequence: 1209 a.a.    

>T6CP016208 NZ_CP011525:c4078017-4074391 [Pseudomonas sp. JY-Q] [TssM]
MNQLWKYLKRWGWPLMTRIGLAMPLLLGLGAVLMLVAIWWLGPQWTWRDQQPLASVAHRSVASLVFVLVALLCWLIVLRT
RFRRLQAERQQAMAAEVDPAQPFVHAQEKALSQALARYLDNAGGRRALYRLPWYLVLGARQAGKSSFIDCTDQSFSLTRI
DKAQARGRPAQALAYPVGWWISNDAVIIDPPGAFISQTGLVDSLGSGSTDVESSVPSGTQAKLWQHLLDWLQRNRSQRAL
NGLVLVVDLPALLHGTVEQRTALAHLLRTRLYEASSQLGSRLPLYVVLSKFDLLDGFDPFYSKLSADKRNSLFGFTFKLD
AVDTFDAWLGEYGEHYDRLLEQLFEQVIDHLDVQGSPGLRSRLYSLHRQLLGLRPILLSFLRETLASDRFTTPALVRGVY
WSSVVQHGDVRNAFVREAAQPYKTSLPLLEGKPQAKALAYFIQQAFGRVIYKEAGLAGDNVRVARRKRQLLWVGASVGVL
AFCVAIASWHRYFDINGVKAASVLAKSREYSHHEVDQRLDPTGRNLLAPLDQIRDAVAVFGDYRAAWPGVADLGLYQGRA
IGPTVDEAYLSLLSRRFLPALASGVIDTMDAAPPGSEQQMAALRVYRMLEDRRNRRAEWVEEWMARQWQQAFPGQGQLQR
DLMRHLKYALAYSDTDLPQYRQRVSDVQQTLRKVPLPQRVYAGLKQQAQEQLHTGLDLRHQVGPAFDVVYQPSSGSSQGD
NGVLLAAMLTAKGFKEYFEPRSQRFTEMAMIDQWALGERAQLDYSDADQAALNERLRNLYSADYIDSWRRALNAFSVADF
RDLDHGVTILEQLAGPAAPVHRLLETVRDNSSLSSPVNVGVADEAPSLVSVNSKPEQQHALAIQRAFAGLSAMLHAAGEK
PSYYDEMHAAIAAVHDYAKAVQGSPDRGKAALHAVHQRFSMTGHDPIGTLQRIATGLPEPINHHVRKVAEQTAQVLNVEA
LRELERRWDAEVYSFFQQRLAERYPFVVRAPDASLEDFEAFFGPKGRLQHFQDQYLKLFLKDNLEALQAGLQGRSLIRPD
VIEQLALADRIRETFFDQRGNLSVQFSIEPLGLSANQRTSLLDLDGQLISYTHGPSQITGIVWPNTLGQHVRSNLTLLRQ
NGNSSSLEYRGPWSMFRLLSRGSLNGRTATSVDLSFRTGDGVMHYRLNAEKAFNPITQQPFKGFRLPRGLLQQPARVALV
EQADVPVM*

  Nucleotide sequence: 3627 bp    

>T6CP016208 NZ_CP011525:c4078017-4074391 [Pseudomonas sp. JY-Q] [TssM]
ATGAATCAACTCTGGAAGTACCTCAAACGTTGGGGCTGGCCGCTGATGACCCGTATCGGTCTGGCAATGCCGCTGCTACT
TGGGCTTGGCGCTGTGCTGATGCTGGTCGCCATCTGGTGGCTCGGCCCGCAATGGACGTGGCGCGATCAGCAGCCGTTGG
CCAGTGTGGCGCATCGTAGTGTGGCCAGCCTGGTGTTCGTGTTGGTGGCGCTGTTGTGCTGGCTGATCGTGTTGAGAACG
CGCTTTCGCCGGTTGCAAGCAGAGCGTCAGCAGGCGATGGCTGCCGAGGTGGATCCGGCGCAACCGTTCGTTCATGCACA
AGAGAAGGCGTTGAGCCAAGCGCTTGCACGCTACCTGGACAATGCCGGTGGGCGTCGCGCGCTGTACCGATTGCCGTGGT
ACCTCGTGCTGGGCGCCAGGCAGGCCGGCAAGAGCAGCTTTATTGACTGCACCGATCAAAGTTTCTCGTTGACCCGCATC
GACAAGGCGCAGGCACGGGGCCGGCCAGCGCAGGCGCTCGCCTACCCCGTGGGGTGGTGGATCAGCAATGATGCGGTGAT
CATCGACCCGCCCGGTGCCTTTATCAGCCAGACCGGCCTCGTAGATTCGCTGGGCAGTGGCTCCACAGACGTTGAGTCTT
CGGTACCGTCTGGAACCCAAGCCAAATTGTGGCAGCATCTGTTGGACTGGCTGCAGCGCAATCGAAGCCAGAGAGCCCTC
AACGGCCTGGTGCTGGTTGTCGACCTGCCCGCGCTACTGCACGGTACCGTCGAGCAACGCACGGCACTTGCCCACCTGCT
GCGCACACGTCTTTATGAGGCGAGCAGCCAGTTGGGCTCGCGCTTGCCGCTGTATGTCGTGTTGAGCAAATTCGATCTGC
TGGACGGCTTCGACCCATTCTACAGCAAGCTTTCGGCCGACAAGCGCAACAGCCTGTTTGGATTCACGTTCAAGCTGGAT
GCCGTCGACACCTTCGACGCTTGGCTGGGCGAGTATGGCGAACATTACGATCGGTTGCTGGAGCAGCTGTTCGAGCAGGT
GATCGATCATCTGGACGTGCAGGGTAGCCCTGGGTTGCGTTCACGTCTCTACTCACTGCATAGGCAGTTGCTTGGATTGC
GTCCAATCCTGTTGAGCTTTCTGCGCGAGACCTTGGCAAGTGACCGTTTCACCACCCCGGCGCTGGTGCGCGGTGTGTAT
TGGTCGTCGGTCGTACAGCACGGTGACGTGCGCAACGCCTTTGTCCGTGAGGCGGCGCAGCCTTACAAGACCAGCCTCCC
CTTGCTTGAGGGCAAGCCGCAGGCCAAGGCGTTGGCCTACTTCATTCAACAGGCCTTTGGGCGGGTCATCTACAAAGAGG
CCGGCCTTGCCGGCGACAACGTCAGGGTGGCACGGCGCAAGCGACAATTGCTGTGGGTGGGTGCTTCTGTAGGCGTCCTG
GCCTTCTGCGTCGCCATCGCCAGCTGGCATCGTTACTTCGACATCAATGGCGTCAAGGCCGCCAGCGTGCTGGCCAAGAG
CCGGGAATACAGCCATCACGAAGTGGATCAGCGTCTGGACCCGACCGGGCGCAACTTGCTGGCGCCGCTGGACCAGATCC
GCGATGCGGTAGCAGTGTTTGGCGACTACCGCGCTGCGTGGCCGGGTGTTGCTGATCTGGGGCTGTATCAGGGCCGTGCC
ATCGGGCCGACCGTGGATGAGGCGTACCTCAGTTTGTTGTCCAGGCGCTTCCTGCCTGCGTTGGCCAGTGGCGTGATCGA
TACCATGGATGCGGCGCCCCCCGGCAGCGAGCAGCAAATGGCCGCGCTCCGGGTTTACCGGATGCTCGAGGATCGCCGGA
ACCGCCGAGCGGAATGGGTCGAGGAATGGATGGCGCGACAGTGGCAACAGGCCTTCCCCGGCCAGGGGCAGCTGCAACGT
GACCTCATGCGGCACCTGAAGTATGCCCTGGCCTACTCGGATACCGACCTGCCGCAGTATCGCCAGCGGGTCAGCGACGT
GCAGCAGACCCTGCGTAAGGTGCCGTTGCCACAACGCGTGTATGCGGGCCTGAAGCAGCAGGCCCAGGAGCAGTTGCATA
CTGGTCTGGACCTGCGTCATCAGGTGGGCCCTGCGTTCGATGTCGTTTACCAGCCGTCTTCCGGCTCGAGCCAGGGCGAC
AACGGTGTTTTGCTGGCGGCCATGCTCACCGCCAAAGGCTTCAAGGAGTATTTTGAACCGCGTAGTCAGCGCTTTACGGA
AATGGCAATGATCGACCAGTGGGCACTGGGGGAACGTGCTCAACTGGACTACTCCGATGCCGACCAGGCTGCGCTGAACG
AGCGCCTGCGCAACCTGTACAGCGCCGACTACATCGACAGCTGGCGCCGCGCCTTGAACGCATTCTCCGTGGCGGATTTT
CGAGACCTGGATCATGGCGTCACGATCCTTGAACAGTTGGCCGGGCCAGCGGCACCGGTGCACCGATTGCTGGAGACGGT
TCGCGACAACAGTTCGCTGTCATCACCGGTGAATGTTGGCGTGGCGGATGAGGCTCCCTCGCTTGTTTCGGTCAACAGCA
AGCCCGAGCAACAACACGCGCTGGCCATCCAGCGGGCGTTTGCAGGCTTGAGCGCCATGTTGCACGCTGCAGGCGAAAAA
CCGAGCTACTACGATGAAATGCACGCAGCCATAGCCGCCGTCCACGACTATGCCAAGGCGGTACAGGGTAGCCCAGACCG
GGGCAAGGCCGCGCTGCACGCGGTGCATCAGCGCTTTTCAATGACCGGGCACGACCCCATCGGCACCTTGCAACGCATCG
CCACTGGCTTGCCGGAGCCAATCAACCATCACGTCAGAAAGGTGGCAGAGCAAACGGCGCAAGTGCTGAACGTTGAAGCG
CTGCGCGAGCTGGAGCGACGGTGGGATGCTGAAGTCTACAGCTTCTTCCAGCAGCGCCTGGCCGAGCGCTACCCATTCGT
CGTCAGGGCACCCGACGCTTCGCTGGAAGACTTTGAAGCGTTCTTCGGACCGAAGGGGCGACTGCAGCATTTCCAGGATC
AATACCTGAAGCTTTTCCTCAAGGACAATCTGGAAGCCTTGCAGGCTGGTCTGCAGGGGCGTTCCCTGATCCGTCCCGAT
GTGATCGAGCAGCTGGCACTGGCTGATCGCATCCGCGAAACGTTCTTTGATCAGCGCGGTAACCTCAGCGTGCAGTTCAG
CATCGAGCCTTTGGGGCTCAGTGCAAATCAACGCACCAGCCTGCTGGATCTGGATGGCCAGCTGATTTCCTACACCCACG
GCCCAAGTCAGATCACCGGCATTGTCTGGCCCAATACCTTGGGGCAACACGTGCGCAGCAACCTGACCCTGCTCAGGCAG
AACGGCAATAGCAGCAGCCTGGAGTATCGAGGGCCTTGGTCGATGTTCCGCCTGCTCAGCCGCGGTTCGCTCAATGGACG
TACGGCAACCAGCGTGGACCTGAGCTTCAGGACGGGTGATGGTGTGATGCACTATCGGCTGAACGCGGAAAAGGCCTTCA
ACCCAATTACTCAACAACCGTTCAAAGGTTTTCGGTTGCCCCGAGGGTTGTTGCAACAGCCAGCCAGGGTGGCGTTGGTC
GAACAGGCGGATGTGCCTGTCATGTAA