Detailed information of component protein
Summary
| Component ID | T6CP016217 |
| Component protein type | TssJ |
| T6SS ID (Type) | T6SS01299  (Type i1) |
| Strain | Pseudomonas sp. JY-Q |
| Replicon | chromosome |
| Sequence | Protein sequence (266 a.a.); Nucleotide sequence (798 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | AA098_RS18545 |
| Coordinate (Strand) | 4085746..4086543 (+) |
| NCBI ID | WP_064614891.1 |
| RefSeq | NZ_CP011525 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS-SciN | PF12790.9 | 3.6e-17 | 157..255 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-265 | MSRLVFLMAPLLIVLVGMPGCTSLSRATKVALDHSLPIGPPKDDPTQVAFSINVSPTLNGNPNSVDVAAIPESILEPSPYAVTLSAGDPHALTDKVGTLLEYLQAQFPAMSRMETGEEDQSEWARSPMEESSPGSYDDPTVVLTLPSSKAEASGPVATPIAIKILQLRDDSLLRNSVYQLLDDDPAKALRSTYIRDDDYLLNPGQFKFIPFEPIEPETRFVAVIGDYSNQQNATWQHVLRIPPRGHQIILSVLVNDAQILLKEEE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| LIPO(Sec/SPII) | 0.9765 | pos: 20-21. MPG-CT. | MSRLVFLMAPLLIVLVGMPG |
Protein sequence: 266 a.a.
>T6CP016217 NZ_CP011525:4085746-4086543 [Pseudomonas sp. JY-Q] [TssJ]
MSRLVFLMAPLLIVLVGMPGCTSLSRATKVALDHSLPIGPPKDDPTQVAFSINVSPTLNGNPNSVDVAAIPESILEPSPY
AVTLSAGDPHALTDKVGTLLEYLQAQFPAMSRMETGEEDQSEWARSPMEESSPGSYDDPTVVLTLPSSKAEASGPVATPI
AIKILQLRDDSLLRNSVYQLLDDDPAKALRSTYIRDDDYLLNPGQFKFIPFEPIEPETRFVAVIGDYSNQQNATWQHVLR
IPPRGHQIILSVLVNDAQILLKEEE*
MSRLVFLMAPLLIVLVGMPGCTSLSRATKVALDHSLPIGPPKDDPTQVAFSINVSPTLNGNPNSVDVAAIPESILEPSPY
AVTLSAGDPHALTDKVGTLLEYLQAQFPAMSRMETGEEDQSEWARSPMEESSPGSYDDPTVVLTLPSSKAEASGPVATPI
AIKILQLRDDSLLRNSVYQLLDDDPAKALRSTYIRDDDYLLNPGQFKFIPFEPIEPETRFVAVIGDYSNQQNATWQHVLR
IPPRGHQIILSVLVNDAQILLKEEE*
Nucleotide sequence: 798 bp
>T6CP016217 NZ_CP011525:4085746-4086543 [Pseudomonas sp. JY-Q] [TssJ]
ATGAGCCGCCTGGTTTTCTTGATGGCGCCTCTGCTGATCGTGCTGGTCGGGATGCCAGGTTGCACGTCCTTGAGCAGAGC
CACCAAGGTGGCGCTGGACCACTCGTTACCAATCGGGCCGCCCAAGGACGACCCAACCCAAGTCGCGTTCAGCATCAACG
TCAGCCCAACGCTCAACGGCAACCCGAACAGTGTCGACGTGGCGGCCATCCCCGAGAGCATCCTGGAACCCAGCCCCTAC
GCAGTCACCTTGAGCGCCGGCGATCCGCACGCACTGACCGACAAAGTCGGGACCTTGCTTGAATACCTGCAAGCGCAATT
CCCCGCGATGTCCCGCATGGAAACAGGCGAAGAGGACCAAAGCGAATGGGCTCGCTCCCCGATGGAAGAAAGCTCGCCCG
GCAGCTATGACGACCCCACGGTGGTGCTCACGCTGCCGAGCAGCAAGGCCGAAGCCAGCGGGCCTGTCGCCACACCGATT
GCCATCAAGATTCTGCAACTGCGTGATGACTCCCTGCTGCGCAACAGCGTGTACCAACTGCTGGACGATGACCCCGCCAA
GGCACTGCGCAGTACCTACATCCGCGATGACGATTACCTGCTGAACCCAGGCCAGTTCAAGTTCATACCGTTTGAGCCCA
TCGAGCCCGAGACCCGCTTCGTCGCGGTGATCGGCGACTACAGCAACCAGCAAAACGCGACCTGGCAGCACGTGTTGCGA
ATTCCGCCACGCGGCCACCAGATCATTCTCTCAGTGCTGGTCAATGACGCGCAGATCCTGCTCAAGGAGGAGGAATGA
ATGAGCCGCCTGGTTTTCTTGATGGCGCCTCTGCTGATCGTGCTGGTCGGGATGCCAGGTTGCACGTCCTTGAGCAGAGC
CACCAAGGTGGCGCTGGACCACTCGTTACCAATCGGGCCGCCCAAGGACGACCCAACCCAAGTCGCGTTCAGCATCAACG
TCAGCCCAACGCTCAACGGCAACCCGAACAGTGTCGACGTGGCGGCCATCCCCGAGAGCATCCTGGAACCCAGCCCCTAC
GCAGTCACCTTGAGCGCCGGCGATCCGCACGCACTGACCGACAAAGTCGGGACCTTGCTTGAATACCTGCAAGCGCAATT
CCCCGCGATGTCCCGCATGGAAACAGGCGAAGAGGACCAAAGCGAATGGGCTCGCTCCCCGATGGAAGAAAGCTCGCCCG
GCAGCTATGACGACCCCACGGTGGTGCTCACGCTGCCGAGCAGCAAGGCCGAAGCCAGCGGGCCTGTCGCCACACCGATT
GCCATCAAGATTCTGCAACTGCGTGATGACTCCCTGCTGCGCAACAGCGTGTACCAACTGCTGGACGATGACCCCGCCAA
GGCACTGCGCAGTACCTACATCCGCGATGACGATTACCTGCTGAACCCAGGCCAGTTCAAGTTCATACCGTTTGAGCCCA
TCGAGCCCGAGACCCGCTTCGTCGCGGTGATCGGCGACTACAGCAACCAGCAAAACGCGACCTGGCAGCACGTGTTGCGA
ATTCCGCCACGCGGCCACCAGATCATTCTCTCAGTGCTGGTCAATGACGCGCAGATCCTGCTCAAGGAGGAGGAATGA