Detailed information of component protein


Summary

Component ID T6CP016218
Component protein type TssK
T6SS ID (Type) T6SS01299 insolico (Type i1)
Strain Pseudomonas sp. JY-Q
Replicon chromosome
Sequence Protein sequence (446 a.a.); Nucleotide sequence (1338 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) AA098_RS18550
Coordinate (Strand) 4086593..4087930 (+)
NCBI ID WP_003251351.1
RefSeq NZ_CP011525
Uniprot ID A0A173HIG3_9PSED, Q88FL0_PSEPK, A0A2J7YJX3_PSEPU, A0A2V4FQI8_9PSED
KEGG ID ppu:PP_4080
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 6e-147 19..442
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-445 MSSRNPVLWPEGLFVKPQHFQQAARASEAALHQRLGSLNAAFYGFSELQLSTEYLSLGKVAITKARGIMPDGTVFDIPADLPPPPPLEIEDDGSKDSEIFLCLPLRTEGGREVSWPDNAANFRYNAQAEEIKDTHSADGDLVQVDLAVPNLQLKRKADDSSAYTRLAVARILERRPDGSLQLDETFYPTSVSVRAVPALQRFLEEITNTLRERARNLAARIGASGQSGIADIRDFNLLQAMNRWWPCFNHLARQGQTHPEQLYLSMSQACGEFVTFTDENRLPQEYPAYHHTALRTSFKPLEDTLRRALSTVLQPRAVSLPLETLDFGVMTTTLEDRRLIDEADFIIAVRADLPPQTLRQMFIQKAKVTSLESLNDLVPLQLPGIPLLPLPVAPRDLPFHAGFSYFELDRRDPAWACMKTANGFGFHVAGEFPGLELQFWAIRGE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9611 - -


  Protein sequence: 446 a.a.    

>T6CP016218 NZ_CP011525:4086593-4087930 [Pseudomonas sp. JY-Q] [TssK]
MSSRNPVLWPEGLFVKPQHFQQAARASEAALHQRLGSLNAAFYGFSELQLSTEYLSLGKVAITKARGIMPDGTVFDIPAD
LPPPPPLEIEDDGSKDSEIFLCLPLRTEGGREVSWPDNAANFRYNAQAEEIKDTHSADGDLVQVDLAVPNLQLKRKADDS
SAYTRLAVARILERRPDGSLQLDETFYPTSVSVRAVPALQRFLEEITNTLRERARNLAARIGASGQSGIADIRDFNLLQA
MNRWWPCFNHLARQGQTHPEQLYLSMSQACGEFVTFTDENRLPQEYPAYHHTALRTSFKPLEDTLRRALSTVLQPRAVSL
PLETLDFGVMTTTLEDRRLIDEADFIIAVRADLPPQTLRQMFIQKAKVTSLESLNDLVPLQLPGIPLLPLPVAPRDLPFH
AGFSYFELDRRDPAWACMKTANGFGFHVAGEFPGLELQFWAIRGE*

  Nucleotide sequence: 1338 bp    

>T6CP016218 NZ_CP011525:4086593-4087930 [Pseudomonas sp. JY-Q] [TssK]
ATGAGTTCACGTAACCCCGTTCTGTGGCCCGAAGGCCTGTTCGTCAAACCGCAGCATTTCCAACAAGCTGCGCGGGCCAG
TGAAGCGGCCTTGCATCAACGCCTTGGCAGCCTCAACGCGGCCTTCTACGGCTTCAGCGAACTGCAGCTGAGCACCGAAT
ACCTGAGCCTGGGCAAGGTCGCCATCACCAAGGCGCGCGGCATCATGCCCGATGGCACGGTGTTCGATATTCCTGCCGAT
CTGCCGCCGCCGCCGCCCCTGGAAATCGAGGACGACGGTTCGAAAGACAGCGAGATATTCCTGTGCTTGCCGCTGCGTAC
CGAGGGGGGCCGTGAAGTCAGCTGGCCCGACAATGCCGCCAACTTCCGCTACAACGCTCAGGCAGAGGAGATCAAGGATA
CCCACAGCGCCGACGGTGACCTGGTGCAGGTCGACCTGGCCGTGCCCAACCTGCAGCTCAAACGCAAAGCCGATGACAGC
AGTGCCTACACCCGCCTGGCCGTGGCTCGTATCCTGGAGCGGCGCCCTGACGGCAGCCTGCAGTTGGATGAAACGTTCTA
CCCCACCAGCGTTTCGGTGCGGGCAGTGCCGGCCCTTCAGCGTTTCCTTGAAGAGATCACCAACACCCTGCGCGAGCGTG
CGCGCAATCTTGCCGCCCGCATCGGCGCTTCGGGCCAGTCGGGTATCGCCGACATCCGCGACTTCAACCTGCTGCAGGCC
ATGAACCGCTGGTGGCCGTGCTTCAACCACCTGGCCAGGCAAGGACAAACACACCCCGAGCAGTTGTACCTGTCCATGAG
CCAGGCGTGTGGCGAATTCGTCACCTTCACCGACGAGAACCGGCTGCCGCAGGAATACCCGGCCTACCACCACACCGCAC
TGCGTACCTCGTTCAAGCCCCTGGAGGATACGCTCCGTCGAGCCCTGAGCACGGTCCTGCAACCCCGCGCCGTGTCACTG
CCGCTGGAGACCCTGGACTTTGGTGTGATGACGACCACGCTGGAAGACCGGCGCCTGATCGACGAAGCCGATTTCATCAT
CGCCGTGCGCGCCGACCTGCCGCCGCAAACGTTGCGCCAGATGTTCATACAGAAAGCCAAGGTCACCTCACTCGAATCCT
TGAATGACCTGGTGCCTTTGCAACTGCCGGGCATCCCGCTGCTGCCCCTGCCGGTTGCTCCACGCGACCTGCCCTTCCAT
GCGGGCTTCAGCTACTTCGAACTGGACCGCCGTGACCCCGCCTGGGCCTGCATGAAGACGGCCAACGGCTTCGGCTTCCA
CGTTGCAGGTGAGTTCCCAGGGCTTGAACTGCAGTTCTGGGCGATCAGGGGTGAATGA