SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP016211
Component protein type	TssB
T6SS ID (Type)	T6SS01299 (Type i1)
Strain	Pseudomonas sp. JY-Q
Replicon	chromosome
Sequence	Protein sequence (168 a.a.); Nucleotide sequence (504 bp)
Reference	[1] Li J, Xie L, Qian S, et al. A Type VI Secretion System Facilitates Fitness, Homeostasis, and Competitive Advantages for Environmental Adaptability and Efficient Nicotine Biodegradation. Appl Environ Microbiol. 2021 Apr 13;87(9). pii: e03113-20. doi: 10.1128/AEM.03113-20. Print 2021 Apr 13. PMID: 33608299

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	AA098_RS18515
Coordinate (Strand)	4080375..4080878 (+)
NCBI ID	WP_004576457.1
RefSeq	NZ_CP011525
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_VipA	PF05591.14	4.1e-52	7..157

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-167	MTKPSDSVAPKERINIKYVPATGDEQAEVELPHKMMVLGDFGLDDSRSLEDRQVMRIDKHTFNNVLNDADVSLAMSVPSALGATPDAELAVNLQFKSIQDFGPDRIARQVPELNKLLQLREALVALKGPLGNVPTFRKQLQHLLNDAHARKQLAQELDLVLEAPKAD

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9926	-	-

Protein sequence: 168 a.a.

						>T6CP016211 NZ_CP011525:4080375-4080878 [Pseudomonas sp. JY-Q] [TssB]
MTKPSDSVAPKERINIKYVPATGDEQAEVELPHKMMVLGDFGLDDSRSLEDRQVMRIDKHTFNNVLNDADVSLAMSVPSA
LGATPDAELAVNLQFKSIQDFGPDRIARQVPELNKLLQLREALVALKGPLGNVPTFRKQLQHLLNDAHARKQLAQELDLV
LEAPKAD*					

Nucleotide sequence: 504 bp

						>T6CP016211 NZ_CP011525:4080375-4080878 [Pseudomonas sp. JY-Q] [TssB]
ATGACTAAACCCTCCGACTCCGTTGCACCCAAAGAACGCATCAACATCAAATATGTGCCCGCCACCGGTGACGAGCAGGC
CGAGGTAGAACTGCCGCACAAGATGATGGTGCTGGGCGACTTCGGCCTCGATGACAGCCGCTCCCTCGAAGACCGTCAGG
TCATGCGCATCGATAAACACACCTTCAACAACGTGTTGAACGACGCCGATGTGAGCCTGGCCATGTCGGTGCCCTCCGCG
CTTGGCGCTACTCCGGATGCAGAGCTGGCAGTCAACCTGCAATTCAAGTCCATCCAGGACTTCGGGCCAGACCGCATCGC
ACGCCAGGTGCCCGAGCTGAACAAGCTGCTGCAGTTGCGTGAAGCGCTGGTCGCCCTGAAAGGCCCGCTGGGCAACGTGC
CCACCTTCCGCAAACAGCTGCAGCACCTTCTGAACGACGCGCATGCCCGCAAGCAACTCGCGCAAGAACTGGACCTGGTG
CTTGAAGCGCCAAAAGCCGACTGA					