Detailed information of component protein
Summary
| Component ID | T6CP016213 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS01299  (Type i1) |
| Strain | Pseudomonas sp. JY-Q |
| Replicon | chromosome |
| Sequence | Protein sequence (137 a.a.); Nucleotide sequence (411 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | AA098_RS18525 |
| Coordinate (Strand) | 4082380..4082790 (+) |
| NCBI ID | WP_064614885.1 |
| RefSeq | NZ_CP011525 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 3.3e-17 | 29..115 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-136 | MSGFFDRLMADPSAIREPSRQENASHKFAAIKRHLETLLNARQGCSQSSPELGLRDFNGHDVSSGDLLQQVSADIRRTLQRFEPRIHVRALKAIPDCSAPLELHFRLDCQVQVNNQAEQLQLELLVNGHNRCTRVR |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9834 | - | - |
Protein sequence: 137 a.a.
>T6CP016213 NZ_CP011525:4082380-4082790 [Pseudomonas sp. JY-Q] [TssE]
MSGFFDRLMADPSAIREPSRQENASHKFAAIKRHLETLLNARQGCSQSSPELGLRDFNGHDVSSGDLLQQVSADIRRTLQ
RFEPRIHVRALKAIPDCSAPLELHFRLDCQVQVNNQAEQLQLELLVNGHNRCTRVR*
MSGFFDRLMADPSAIREPSRQENASHKFAAIKRHLETLLNARQGCSQSSPELGLRDFNGHDVSSGDLLQQVSADIRRTLQ
RFEPRIHVRALKAIPDCSAPLELHFRLDCQVQVNNQAEQLQLELLVNGHNRCTRVR*
Nucleotide sequence: 411 bp
>T6CP016213 NZ_CP011525:4082380-4082790 [Pseudomonas sp. JY-Q] [TssE]
ATGAGCGGTTTCTTCGATCGTTTGATGGCGGACCCGTCCGCCATCCGGGAGCCGTCTCGCCAGGAAAACGCTTCGCACAA
GTTCGCGGCCATCAAGCGCCACCTCGAAACGTTGCTGAACGCTCGCCAGGGTTGCTCCCAAAGCAGCCCCGAGCTGGGCC
TGCGCGACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAG
CGCTTTGAGCCGCGCATCCACGTGCGCGCGCTCAAAGCGATACCGGATTGTAGCGCCCCGTTGGAACTGCATTTCAGGCT
CGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGCTGCAGCTGGAGCTGCTGGTAAACGGACACAACCGCTGCACCC
GAGTGAGGTGA
ATGAGCGGTTTCTTCGATCGTTTGATGGCGGACCCGTCCGCCATCCGGGAGCCGTCTCGCCAGGAAAACGCTTCGCACAA
GTTCGCGGCCATCAAGCGCCACCTCGAAACGTTGCTGAACGCTCGCCAGGGTTGCTCCCAAAGCAGCCCCGAGCTGGGCC
TGCGCGACTTCAACGGGCATGACGTCAGCAGCGGCGACCTGCTGCAGCAAGTGAGCGCCGATATCCGCCGTACCCTCCAG
CGCTTTGAGCCGCGCATCCACGTGCGCGCGCTCAAAGCGATACCGGATTGTAGCGCCCCGTTGGAACTGCATTTCAGGCT
CGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGCTGCAGCTGGAGCTGCTGGTAAACGGACACAACCGCTGCACCC
GAGTGAGGTGA