Detailed information of component protein


Summary

Component ID T6CP016216
Component protein type FHA
T6SS ID (Type) T6SS01299 insolico (Type i1)
Strain Pseudomonas sp. JY-Q
Replicon chromosome
Sequence Protein sequence (71 a.a.); Nucleotide sequence (213 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) AA098_RS18540
Coordinate (Strand) 4085537..4085749 (+)
NCBI ID WP_003251348.1
RefSeq NZ_CP011525
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-70 MSTLTLCIINLDQVQHTVTLRHRFDRTGGTIGSDGADWVIKDPMAAFEALADAAPSTTAPLQQLTAGERP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9884 - -


  Protein sequence: 71 a.a.    

>T6CP016216 NZ_CP011525:4085537-4085749 [Pseudomonas sp. JY-Q] [FHA]
MSTLTLCIINLDQVQHTVTLRHRFDRTGGTIGSDGADWVIKDPMAAFEALADAAPSTTAPLQQLTAGERP*

  Nucleotide sequence: 213 bp    

>T6CP016216 NZ_CP011525:4085537-4085749 [Pseudomonas sp. JY-Q] [FHA]
ATGAGCACATTGACCTTGTGCATCATCAATCTCGACCAGGTGCAGCACACCGTCACCCTGCGTCACCGGTTCGATCGCAC
GGGCGGCACCATCGGCAGCGACGGGGCCGATTGGGTGATCAAAGACCCCATGGCGGCGTTCGAGGCGCTGGCTGATGCGG
CGCCATCAACCACGGCCCCGCTGCAACAGCTGACGGCGGGAGAGCGCCCATGA