Detailed information of component protein


Summary

Component ID T6CP016212
Component protein type TssC
T6SS ID (Type) T6SS01299 insolico (Type i1)
Strain Pseudomonas sp. JY-Q
Replicon chromosome
Sequence Protein sequence (496 a.a.); Nucleotide sequence (1488 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) AA098_RS18520
Coordinate (Strand) 4080896..4082383 (+)
NCBI ID WP_064614883.1
RefSeq NZ_CP011525
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 6.9e-119 69..368
VipB_2 PF18945.2 1.5e-45 381..492
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-495 MPKPSTTVTVETQAETLSNATLLDQIMAETKLVPTQEGYQVARQGVSAFIAEILKSHDPDQLINKHRVDQMIAELDRVLSKQMDAILHEPAFQQLESAWRSLKLLVDRTDFRENIKLEVLHVSKEDLLDDFENAADITCSGIYKHVYTAGYGQFGGEPVAAMVGNYNFGPSSPDIKLLSHMASVGAMSHAPFIAAPSPEFFNLSSFEALPNLKEIKDIFAGPRHAKWRAFRESEDARHTALTGPRFMLRSAYHHQDQPISSFHYDENINGRHDNYLWGSSAFLLASCINDSFARYRWCPNIIGPQSGGAVEGLPVHLYESLGQLQAKIPTEVLISDRKEFELAEEGFIALTMRKDSDNAAFFSANSVQKPKNFPKTPEGLQAQTNYKLGTQLPYLFIVNRLAHYIKVLQREQIGSWKERRDLESELNKWIKQYVADQENPSADVRSRRPLRAARVEVSDVAGDPGWYQVSLAVRPHFKYMGANFEISLVGRLDTQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9765 - -


  Protein sequence: 496 a.a.    

>T6CP016212 NZ_CP011525:4080896-4082383 [Pseudomonas sp. JY-Q] [TssC]
MPKPSTTVTVETQAETLSNATLLDQIMAETKLVPTQEGYQVARQGVSAFIAEILKSHDPDQLINKHRVDQMIAELDRVLS
KQMDAILHEPAFQQLESAWRSLKLLVDRTDFRENIKLEVLHVSKEDLLDDFENAADITCSGIYKHVYTAGYGQFGGEPVA
AMVGNYNFGPSSPDIKLLSHMASVGAMSHAPFIAAPSPEFFNLSSFEALPNLKEIKDIFAGPRHAKWRAFRESEDARHTA
LTGPRFMLRSAYHHQDQPISSFHYDENINGRHDNYLWGSSAFLLASCINDSFARYRWCPNIIGPQSGGAVEGLPVHLYES
LGQLQAKIPTEVLISDRKEFELAEEGFIALTMRKDSDNAAFFSANSVQKPKNFPKTPEGLQAQTNYKLGTQLPYLFIVNR
LAHYIKVLQREQIGSWKERRDLESELNKWIKQYVADQENPSADVRSRRPLRAARVEVSDVAGDPGWYQVSLAVRPHFKYM
GANFEISLVGRLDTQ*

  Nucleotide sequence: 1488 bp    

>T6CP016212 NZ_CP011525:4080896-4082383 [Pseudomonas sp. JY-Q] [TssC]
ATGCCAAAGCCAAGCACAACTGTCACTGTTGAAACACAGGCCGAAACACTGAGCAATGCCACCTTGCTCGACCAGATCAT
GGCAGAGACCAAGTTGGTTCCCACACAAGAGGGTTACCAAGTGGCCAGGCAGGGTGTATCCGCCTTCATTGCCGAAATTC
TAAAAAGTCATGACCCAGATCAATTGATCAACAAACATCGCGTCGACCAGATGATTGCCGAGCTGGATCGGGTCCTCAGC
AAGCAGATGGATGCCATTCTGCATGAACCCGCATTCCAGCAACTTGAATCCGCGTGGCGCAGCCTCAAACTTCTGGTCGA
CCGTACGGACTTTCGCGAGAACATCAAGCTCGAAGTCTTGCACGTCAGCAAGGAAGACTTGCTCGATGATTTCGAGAACG
CCGCCGACATTACCTGCAGTGGTATTTATAAACACGTCTATACCGCCGGTTACGGCCAGTTCGGTGGCGAGCCGGTCGCG
GCCATGGTTGGCAATTACAACTTCGGCCCCTCTTCGCCTGATATCAAACTGTTGAGCCACATGGCATCCGTCGGTGCCAT
GTCGCATGCGCCCTTCATTGCGGCACCCTCCCCCGAGTTCTTCAACCTCAGCAGCTTCGAAGCGCTACCCAACCTGAAAG
AAATCAAAGACATCTTCGCCGGCCCACGGCATGCCAAGTGGCGTGCGTTCCGCGAGAGCGAAGATGCTCGCCACACCGCG
CTGACCGGGCCGCGCTTCATGCTGCGCTCCGCCTACCATCACCAGGACCAGCCGATCAGCAGCTTCCATTACGATGAGAA
CATCAACGGCCGGCACGACAATTACCTGTGGGGCAGCTCAGCCTTCCTGTTGGCCAGCTGCATCAACGACAGCTTTGCCC
GCTACCGCTGGTGCCCCAACATCATCGGCCCGCAATCGGGAGGTGCCGTCGAAGGCCTGCCGGTGCATCTGTACGAATCG
CTGGGCCAGCTGCAGGCCAAGATTCCTACCGAGGTACTGATTTCCGACCGCAAGGAATTCGAGCTGGCCGAAGAGGGCTT
TATCGCCCTGACCATGCGCAAGGACAGCGACAACGCCGCGTTCTTCTCAGCCAACTCGGTGCAGAAGCCGAAAAACTTCC
CCAAGACACCCGAAGGCCTGCAGGCACAGACCAACTACAAGCTCGGCACCCAACTGCCCTACCTGTTCATCGTCAATCGC
CTGGCCCACTACATCAAGGTGCTGCAGCGCGAGCAGATCGGCAGCTGGAAGGAGCGACGCGACCTTGAGTCCGAACTCAA
CAAATGGATCAAGCAATACGTCGCCGACCAGGAAAACCCTTCGGCCGATGTGCGCAGCCGTCGGCCATTGCGTGCTGCCA
GGGTCGAGGTCTCGGACGTGGCGGGTGATCCGGGCTGGTACCAGGTCTCGCTCGCCGTGCGCCCGCACTTCAAGTACATG
GGCGCGAACTTCGAAATTTCCCTGGTAGGCCGGCTCGACACGCAATGA